Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02683 ATGGAAATTAGTGTTAGGCAGGAACTTATTGAACCTTTACCCTTGCAACGAACCAGCAATCACGAGGCATCAAATTTGTCTCCCACGTTTATTGAACTCAGTAGCGACAGTGAGTCGGATTCGGAAGATTCGGAGCAGGAAGTGGTCGATGGAATTTTGGGAGTAGATACGAGAAGCGTTGTGCTCCCAAACGACGTCGATGGAGGGCCTTCGAAGAAGAGGAGGCTGAACGAGTTGGAAGTTGTTAAACCTCTAGGTTTTCTTCCGCCCGCGTCGCTGGACGAAAAGCATTCCATGGCGGTTATTCTGCCCCCGTCAGCAGAGGCGGGCACTGGACAGGAGACGAGAACTTCGAATGCAAATGGTTCTGCCTGCAAACAGTTTTGGAAGGCGGGTGATTATGAAGGAGCTCCTTGCAGTTACTGGGAGTCAACATCGGGTGGCATGGACCATGTTAGGGTTCATCCTAAGTTTCTACATTCTAATGCGACCAGTCATAAGTGGGCTCTTGGAGCTTTTGCCGAGTTATTGGACAACTCGTTAGATGAGGTTTCGAGTGGAGCTACGCATGTTAATATAGACATGCTTGTGAATAAGAAAGACAGGACCAAAATGTTATTAATTGAAGATAATGGTGGTGGGATGAGCCCAGAAAAAATGCGTCACTGCATGTCATTGGGTTATTCAGAAAAAACCAAATTAGCAGACACTATTGGACAATATGGTAATGGTTTTAAGACTAGCACCATGAGACTTGGAGCAGATGTAATTGTATTCTCACGTTGTTGTGGACAATATGGGAAAAGTGGCACACAGAGCATTGGATTACTATCCTATACATTTTTGAGAAGCACTGGAAAGGAAGATATCGTAGTTCCAATGCTTGACTATGAAAGGAAGGGAGGTGAATGGGTCAAAATAGTGCGATCTTCTCTCAGTGATTGGAACAAAAACATGGATACAGTTGTTCAGTGGTCTCCGTTTGCCAATGAAGCTGAGCTTCTTCGTCAGTTTTACCTGATGAAAGATCATGGGACTCGCATTATAATATATAACCTCTGGGAAGATGACCAGGGACAGTTGGAACTGGATTTTGATACGGACCCACATGACATCCAAATCCGAGGCGTCAACAGAGATGAGAAAAGTATACAAATGGCAAAAAAATTTCCCAACTCTAGGCACTTCTTGACTTATCGGCATTCCTTGAGGAGTTATGCTTCGATTCTTTATTTGAGGCTCCCTCCTTGTTTTCGCATCATTCTTCGTGGGAGAGATGTAGAACACCATAATATAGTGAATGATATGATGATGTCTCAAGAGGTCACTTACAGACCTCAGCCAGGGGCTGATGGGGCCGGGCCGGTTGGCAAAGATATGGTTGCTGTTGTGACCATTGGGTTTGTGAAGGATGCAAAGCATCATATAGATGTTCAAGGATTCAATGTTTATCATAAGAATCGGCTCATCAAGCCATTTTGGAGGCTTTGGAATGCTTCAGGAAGTGATGGTCGTGGAGTTATAGGTGTTTTAGAAGCAAATTTTGTTGAACCTGCCCACGATAAGCAGGGGTTTGAGCGAACAACTGTTCTTGCCAGACTTGAAGCACGGTTGATACAGATGCAGAAAACTTACTGGTGTTCCTACTGTCATAAGATTGGCTATGCTCCGAGACGAATTGATAAACCTAACAATCGGACTCCAGATAGAGAAAGTTCCCCGGATGATTATTCTTCACAGCCTCCACCTCAATCAAAAAAGAAGAGTACTTCATTAAGTGGTAGGAAACCCGATAAAATCTATTTAGGAAAAGAAACAGAAAAGTTCCAGAAAACAAAGGACTTCAGGTATGGGAATATGCATTCAAGTAAAGACAAAAACGGCAGTATGACCCCTGACTCTGAGAAATCGAGGACAAGACCATCTTCTTCTGAGCCACCTTCGCCTTCTGGACTAGAAGTTAGGGTTGACAACCATCATGGTGGACAGGCAAACGGTACTGGCAATGAGACATTTCATGGTAATGATGTTTCAATGAGAATGAAGGCATCTTCAAATGGAGGTGTCAGTCAAGCTCAGCAAGGGGGATTGGCTAAACCGAAGGGAGGAGACACAAACGATTATGAGCGTTCCCCTTCAAGTTCTGATCTTCACATGCTACAGCAGTTGAAGGAAGAAAATGAAGAATTGAAGGAGAGATTAAAGAGAAAGGAAGCCGATCATGAAAAATTGCAAGATGAAAGAGAGAGGAGGTGTAAATCACTTGAGTCTCAGCTTACAGCTGCAGAGCTTAAAATCGAGGAATTGAACAAAGAACAAGAGAGCCTAATAGATATTTTCTCTGAGGAGAGAGATCGAAGAGAAATCGAGGAGCGTAATCTGCGAAAGAAGCTTCAGAAAGCATTTATACACAAGAATATGGGTGATAGCAACCGTGTTTTGGAAGATGATTTACCAAACGAATCATATGACTGGTGTTGTGTTTCAAAGTATGGAACAGGAGCAGACGATCTTCTGTTGCGAATTGCGGTGACGAAATCCGGTGCCCTAGAAGGAATTAAAAACAATTCCAACAGCAAGGAAGCTGAAGAAATTACAGGGAGGCGGCATGTTAGACCTTACTACTTCGAGTTCATAGCTCATCTTCATATCTGCAATTTGCAGGTAAAGAATCGATGGGCCGGCAAAACTATTGTAGACTTGTTTGCTGAAGAGTTCAAAGGCCGAACTTACGAGTACTATGTTGATGCTGTCGAATGTGGTCGCATACAAGTCGATGGGGAGATGGTTCCTATTTCATATATAGTTAAATCATCTCAAAAGATAAGCCATTTCCTACATAGGCATGAACCTCCGGTAATGCCTTGGGGCGTGAAAGTTCTCAAAGAAGAAGAAGAAGTGCTCACCGTTTGCAAGCCTGCATCTGTTCCAGTTCATCCATGTGGTCAATATAGGAAAAACACAGTTCTCGGTATACTCGAGGCAGAGCATGGTTTGGCACCTCTATTTCCTATTCATCGACTGGATCGCCTTGTCTCAGGACTTCTTATCCTTGCTAGAAATGCATCCAAAGCTGACCTTTTCAGACAACAGATTGAGTCTGGGCTGGTGAAGAAGCAGTATATTGCAAGGGTAGTGGGTGTGTTTCCAGAAGAAGAGCAAGTAGTTGATGCTAATGTAAACTACAATCCTCGAGAGGGAAGGAGCACAGCGGAGATGCTTGATTCTTCCACTGATACTCTAACCAAGGGGAAGGCCGCCCAAACAAAGTTCACTCGTATCAGTTCCGATGGAGTCCACAGCATTGTTTCATGCGAACCAATTACAGGCCGCACTCATCAAATCCGTGTGCACTTGCAATATACAGGGTATCCTATAGCCAATGATGCCCTGTACCTTACAAAAGAAGCTTCTGGTCGTTCCGTGCAAAAAACAACTGCAGATAGAGCTGCAGCAATATCATCCTGTTCTCCTGCACGTGATGTTCAAGAAGATTGTGCTAATGCATGCAAAGAAAACTGGAGCGAAGATTTTAGTATTGATCCAATGTGTACAAACTGTCCAAATTTGGCTCCAAAGGGATATGAAGGAGAAGAAGAGGGTCTGTGGCTGCATTGTGTTCAGTACTCTGGACCAGAATGGATCTACGAATGCCCATATCCAGAATGGGCTTCACTTGAATAG 3684 43.76 MEISVRQELIEPLPLQRTSNHEASNLSPTFIELSSDSESDSEDSEQEVVDGILGVDTRSVVLPNDVDGGPSKKRRLNELEVVKPLGFLPPASLDEKHSMAVILPPSAEAGTGQETRTSNANGSACKQFWKAGDYEGAPCSYWESTSGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVSSGATHVNIDMLVNKKDRTKMLLIEDNGGGMSPEKMRHCMSLGYSEKTKLADTIGQYGNGFKTSTMRLGADVIVFSRCCGQYGKSGTQSIGLLSYTFLRSTGKEDIVVPMLDYERKGGEWVKIVRSSLSDWNKNMDTVVQWSPFANEAELLRQFYLMKDHGTRIIIYNLWEDDQGQLELDFDTDPHDIQIRGVNRDEKSIQMAKKFPNSRHFLTYRHSLRSYASILYLRLPPCFRIILRGRDVEHHNIVNDMMMSQEVTYRPQPGADGAGPVGKDMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKTYWCSYCHKIGYAPRRIDKPNNRTPDRESSPDDYSSQPPPQSKKKSTSLSGRKPDKIYLGKETEKFQKTKDFRYGNMHSSKDKNGSMTPDSEKSRTRPSSSEPPSPSGLEVRVDNHHGGQANGTGNETFHGNDVSMRMKASSNGGVSQAQQGGLAKPKGGDTNDYERSPSSSDLHMLQQLKEENEELKERLKRKEADHEKLQDERERRCKSLESQLTAAELKIEELNKEQESLIDIFSEERDRREIEERNLRKKLQKAFIHKNMGDSNRVLEDDLPNESYDWCCVSKYGTGADDLLLRIAVTKSGALEGIKNNSNSKEAEEITGRRHVRPYYFEFIAHLHICNLQVKNRWAGKTIVDLFAEEFKGRTYEYYVDAVECGRIQVDGEMVPISYIVKSSQKISHFLHRHEPPVMPWGVKVLKEEEEVLTVCKPASVPVHPCGQYRKNTVLGILEAEHGLAPLFPIHRLDRLVSGLLILARNASKADLFRQQIESGLVKKQYIARVVGVFPEEEQVVDANVNYNPREGRSTAEMLDSSTDTLTKGKAAQTKFTRISSDGVHSIVSCEPITGRTHQIRVHLQYTGYPIANDALYLTKEASGRSVQKTTADRAAAISSCSPARDVQEDCANACKENWSEDFSIDPMCTNCPNLAPKGYEGEEEGLWLHCVQYSGPEWIYECPYPEWASLE* 1228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29736675 29762573 + Chy2G049500.1 Chy02g02683 222131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02683 1227 MobiDBLite consensus disorder prediction 1 25 - -
Chy02g02683 1227 Pfam RNA pseudouridylate synthase 967 1120 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Chy02g02683 1227 Gene3D Pseudouridine synthase 952 1181 - -
Chy02g02683 1227 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 1 805 IPR045261 GO:0016887
Chy02g02683 1227 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 892 1147 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Chy02g02683 1227 CDD PseudoU_synth_ScRIB2 943 1225 - -
Chy02g02683 1227 ProSitePatterns Rlu family of pseudouridine synthase signature. 1005 1019 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Chy02g02683 1227 MobiDBLite consensus disorder prediction 558 573 - -
Chy02g02683 1227 Gene3D - 156 364 IPR036890 -
Chy02g02683 1227 MobiDBLite consensus disorder prediction 634 649 - -
Chy02g02683 1227 MobiDBLite consensus disorder prediction 591 621 - -
Chy02g02683 1227 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 171 372 IPR036890 -
Chy02g02683 1227 PANTHER PROTEIN MICRORCHIDIA 7 1 805 - -
Chy02g02683 1227 Coils Coil 713 786 - -
Chy02g02683 1227 MobiDBLite consensus disorder prediction 574 590 - -
Chy02g02683 1227 MobiDBLite consensus disorder prediction 662 693 - -
Chy02g02683 1227 Pfam Morc6 ribosomal protein S5 domain 2-like 401 546 IPR041006 -
Chy02g02683 1227 MobiDBLite consensus disorder prediction 558 719 - -
Chy02g02683 1227 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 171 280 - -
Chy02g02683 1227 SUPERFAMILY Pseudouridine synthase 949 1223 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02683 - - - csv:101222073 1481.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02683 Chy-Chr2:29736675 Chy07g01547 Chy-Chr7:19704848 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g66 . . . Bda15g00683 Bpe12g00469 . . . . . Cma10g00039 Cma11g00018 Car10g00031 Car11g00016 Sed12g2534 . Cpe04g01631 Bhi02g00655 Tan09g2405 Cmetu02g0008 . Hepe09g0029 . . Cla06g01762 Cam06g1955 Cec06g2005 Cco06g2010 Clacu06g1913 Cmu06g1853 Cre06g2666 . . Cone13ag0241 . . . . . . . . . . . . Bma08g00268 . Cmo10g00037 Cmo11g00017 . . . . . Cpe18g00921 . . . . . . . . . . . . . . Lsi06g01661 Csa01g00032 Chy02g02683 Cme02g02089
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002795 1 2 1 1 1 2 1 2 2 2 2 2 1 2 3 1 2 1 1 2 2 1 2 3 2 1 2 4 3 2 54