Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02687 ATGATGAGAGGATTGCCACCTGGATTTCGGTTTGAGCCAACAGAAGAAGAGCTTGTGTTTGAGTATCTAAAATGCAAGGTCTTCTCCTCAGCCTTGCCTGCTTCTATCATTCCAGAGATCAATGGCGTTTGGAATTTGGATCCTTGGGATATTCCTGCTGCAGGTGGTGGGGATGAAGAGAAATACTTATTCAGCAAGAAGGAGGCAGAGGAACATAACAATAACAATAATGGAGGAGGAGGAATAATTGGATGGAGTAAGAGTGGATACTGGAAGGTAAGAGGAAGGGAGAAGGAAATAGTAAGTAGTGAGAATGGAGTGGCATTAATGGGTATGAAGAACACTCTGGATTTCTACACCAACAACATCAGGAAGATGAAGAAGACAGGTTGGGTGATGCATCAGTATCGTCTCATAATACCACATTCTCAATCTTCAACTAACAAATGGGATGAGAATGGGGATCATGAGGATGAGCATGATGAGCATGTGAATCACATCACTACTTCCACCGCCTTCTCCGACGACGAACATGATTCTTATCATTGCATCTAA 555 42.88 MMRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEEKYLFSKKEAEEHNNNNNGGGGIIGWSKSGYWKVRGREKEIVSSENGVALMGMKNTLDFYTNNIRKMKKTGWVMHQYRLIIPHSQSSTNKWDENGDHEDEHDEHVNHITTSTAFSDDEHDSYHCI* 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29785121 29787612 + Chy2G049540.1 Chy02g02687 222135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02687 184 Gene3D NAC domain 14 172 IPR036093 GO:0003677|GO:0006355
Chy02g02687 184 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 150 - -
Chy02g02687 184 ProSiteProfiles NAC domain profile. 5 170 IPR003441 GO:0003677|GO:0006355
Chy02g02687 184 PANTHER NAC DOMAIN CONTAINING PROTEIN 97 5 150 - -
Chy02g02687 184 Pfam No apical meristem (NAM) protein 6 138 IPR003441 GO:0003677|GO:0006355
Chy02g02687 184 SUPERFAMILY NAC domain 2 147 IPR036093 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02687 - - - bhj:120071614 216.468
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02687 Chy-Chr2:29785121 Chy07g01492 Chy-Chr7:19206972 2.60E-32 dispersed
Chy02g02687 Chy-Chr2:29785121 Chy06g01562 Chy-Chr6:17575905 9.13E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g58 . Blo16g00285 . . . Bpe13g00190 Bma06g00278 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0227 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy02g02687 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000761 3 3 4 4 4 3 5 3 3 2 2 3 5 3 2 4 3 1 5 3 3 3 3 3 3 3 2 3 3 2 93
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17630 PF02365 NAM 3.30E-27 No_clan Chy TF