Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02701 ATGCCGGAATACCAGGAAATCAAGGACCTCGACTTGGATCTCGGACCCGACGAGTCTGATCTTGCCCCTCTCCCTCCCACCGTTACTTCCCGGGTACTACACATGTTCGGAGACATCGCAGCAGGTCCCGCTTACAGGTTTTCCCAATGGCTTGAACTCGTCCGTAAACGTAGCGGCAAACATCGCGCTTCTGCCTGCCACAACCGCCCTCATCCACCATTCGAAATGCCTTCCGGTGCTGAGGAACTTGTCAATCAATCAATAAATCTTCCAGCTCCCGAGCAATCAACTGAAACAAATCTGTGGGATAGACTTGCTAAAGCTTCAGTGTTGGATATCGAGTCAAGCTCTTTCTCGTGGGATAGGCTTTTATCTCTTCACCGCACCGAACACAGTAGTAGCACTGAACATTCGGAAGATGAAATGAATAAAGCCCTTGAGGTCACTGTAAATTCTGGTGGAGTCGTTTTTTTTGCACTCTTCAATCAGCTTGGATATGATGATAATCTTCCAAAGGAAGCAGCTGCTGTGATAAAGATATCCTCTTCAAGAATGGCCACACAATCTGAACGCCTTGGCTATGAATTTGCCAAGTGGCTTGGGGTTCAAGCTCCACAGGCTAGAGTTATTCATAATTCCAGCACGGAATGGCTCCAGATAAAAGAAGCTGCAGAGAAAGCACGGGATATCGCCTGTTTGGAGGGTGATGAGGTTGGTGAAATGACATGTTCTGAACTACTGGAAGCACTTGAATTTAGCAGATGTCTTTTTCTAATGAGCTATGTGCATGGATCTCCATTGTTAGAAAGCTCAAGTGCATTTGAATCACGAGAAATTGCTGAAAAATTAGCTGCTGCGATTGGAAGGATCTTATTGTTGGATCTTGTTATTAGAAATGAAGATAGGCTCCCTTGTCGTCTTCTTCGTTGGCGTGGAAATTCGGCAAATTTGCTCTTGGCTGATCGAATGACGTGTGCAGATATGAACACTTTTGAGGAAGCCTTGGATTCTGCTATTAAGCGATACAAACCAAAAGTTATTACAACGCTTCAAAAGGAAAGAAGGGGAACTTTAGTGGACAATAGATCGAGTTCTAATTCAGGGTTGATTTCAGAAATCCCTGAACTTTGTGATGTTGTTGAATCCCCAAAATCTAGTAACCTAAGTGTAAAAAGTCAAATATCAGATGACACAATGCCTTGTGATTTTAATATTGTGGCTATTGACTCTGGTGTTCCCCGTCGTCCTCCTGCTGGAAAACGTGCTAATGACCAGTCAATTTACCCAAAATTAGTTGAGTTGTTACTTAATAGTTCTGAGTTCTCCTCTAATCTATTACATGACATTACAGGAGGGAAATTAGGGTTCCCTTCATCAACCGATGCCAACTCAAATTGTGGCATGCAGCCCTCAGAAATGAGTTATATTGTCCATGAATTTCGATATGGATTTCGTGCTGCTCTTAGGGATTTGCAAGGATTTCACATATTTTTGCTTACACTGCACCAAAAGTTGGACAACTCATTACGAGCGTTCATGAATATAATAAATAAATTTCCCCTGGGGGAATCTGACAAAGAGGATACAGGAATTCCTGAGTCCCATGTGCAGGGTTCTACCACTCTTCATTGTTTATCTCCACGTTGTAAGGAACGAGCCTCTAGTGATGGTAATATGGATGTTACAGAGTCAGCTCCAAGATCATCATCATCAGGAAATAAAGAAAGCTCAGACTTATCTTCTCCCTTATCACGAGATAGCTCACAAGGAAAGTTATACAGGGGAAGTGCAGAGCCCATTCATAGCCTTCGTTTGACTGCAAAGCTCCGGGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCAAATAAAGAATTGGATATGTGGAATGAAGTGCTTAAGAATGAAGCTGTTAAACTCTGCCAGGAGAACAAATTTAATACTGGGTTTTTTGAGGGCAGCGACAGTCATGGAGTTGTTGATGCTTATGAATTGAAGGTGAGACTTGAGCACATTCTTGAAAGGATTGCATTGATATCCGAGGCTGCAAATACAGAACGGCCTTCTTCAGTTACACCTGCCTTGTTTATAGGCGGTGCCTTGGCTGCAAGATCTGTTTACACTCTTCAGCATCTAGGAGTTACTCATATTTTATGCCTCTGCTCAAATGAAATTGGGCAGTCAGATTCGCAGTTTCCTGATCTGTTTGAATACAAAAATTTTTCGATAAGTGATGATGAAGACTCAAACATCAGCGGTATCTTTGAAGAAGCTTCTGATTTTATTGACGGCGTTGAGAGAGAGGGTGGGAAGGTCCTAGTTCATTGTTTTGAAGGGAAAAGCAGGAGTGCCACATTGGTTCTTGCTTACTTGATGCTCAGAAAGAAATACACGCTGTTAAAAGCATGGAATGCTTTGAAACGGGTTCACCGCCGAGCTCAGCCTAATGATGGGTTTGCTAAAACATTATTAGAATTAGATCGAAGAATACACGGAAAGGTTTCCATGGAGTGGCAATCACGAAAACCAACCATGAAAGTTTGCCCAATTTGTGGAAAAAATGCTGGACTGAGCAGTAGCTCACTGAAGCTACATCTGCAGAAATCACACAAGAAGCTATCATCTGGGAGCGTAGACAGCGCAATGACTATGGAAATACAGAAGGCATTGACAGCTCTAAGAATCAGTCGTGGAGGAAGTGTTAGCCCAACCCAGAGGCAATCTCTTCTCATCTTGGATGAATAG 2745 42.88 MPEYQEIKDLDLDLGPDESDLAPLPPTVTSRVLHMFGDIAAGPAYRFSQWLELVRKRSGKHRASACHNRPHPPFEMPSGAEELVNQSINLPAPEQSTETNLWDRLAKASVLDIESSSFSWDRLLSLHRTEHSSSTEHSEDEMNKALEVTVNSGGVVFFALFNQLGYDDNLPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQAPQARVIHNSSTEWLQIKEAAEKARDIACLEGDEVGEMTCSELLEALEFSRCLFLMSYVHGSPLLESSSAFESREIAEKLAAAIGRILLLDLVIRNEDRLPCRLLRWRGNSANLLLADRMTCADMNTFEEALDSAIKRYKPKVITTLQKERRGTLVDNRSSSNSGLISEIPELCDVVESPKSSNLSVKSQISDDTMPCDFNIVAIDSGVPRRPPAGKRANDQSIYPKLVELLLNSSEFSSNLLHDITGGKLGFPSSTDANSNCGMQPSEMSYIVHEFRYGFRAALRDLQGFHIFLLTLHQKLDNSLRAFMNIINKFPLGESDKEDTGIPESHVQGSTTLHCLSPRCKERASSDGNMDVTESAPRSSSSGNKESSDLSSPLSRDSSQGKLYRGSAEPIHSLRLTAKLRDFHKFAKVDAESNKELDMWNEVLKNEAVKLCQENKFNTGFFEGSDSHGVVDAYELKVRLEHILERIALISEAANTERPSSVTPALFIGGALAARSVYTLQHLGVTHILCLCSNEIGQSDSQFPDLFEYKNFSISDDEDSNISGIFEEASDFIDGVEREGGKVLVHCFEGKSRSATLVLAYLMLRKKYTLLKAWNALKRVHRRAQPNDGFAKTLLELDRRIHGKVSMEWQSRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALRISRGGSVSPTQRQSLLILDE* 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29847718 29867938 + Chy2G049680.1 Chy02g02701 222149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02701 914 MobiDBLite consensus disorder prediction 1 20 - -
Chy02g02701 914 MobiDBLite consensus disorder prediction 1 15 - -
Chy02g02701 914 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 11 913 - -
Chy02g02701 914 Gene3D - 266 367 IPR036940 GO:0016301
Chy02g02701 914 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 11 913 IPR035010 GO:0004721|GO:0009737|GO:0043622
Chy02g02701 914 Gene3D Protein tyrosine phosphatase superfamily 665 833 IPR029021 -
Chy02g02701 914 MobiDBLite consensus disorder prediction 547 594 - -
Chy02g02701 914 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 752 808 IPR000387 GO:0016311|GO:0016791
Chy02g02701 914 Pfam Dual specificity phosphatase, catalytic domain 703 828 IPR000340 GO:0008138|GO:0016311
Chy02g02701 914 ProSiteProfiles Dual specificity protein phosphatase domain profile. 687 832 IPR020422 GO:0006470|GO:0008138
Chy02g02701 914 SUPERFAMILY Protein kinase-like (PK-like) 49 425 IPR011009 -
Chy02g02701 914 SMART dsp_5 687 829 IPR020422 GO:0006470|GO:0008138
Chy02g02701 914 Pfam Actin-fragmin kinase, catalytic 98 359 IPR015275 -
Chy02g02701 914 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 687 831 IPR029021 -
Chy02g02701 914 CDD DSP 688 825 - -
Chy02g02701 914 ProSitePatterns Tyrosine specific protein phosphatases active site. 774 784 IPR016130 GO:0016311|GO:0016791
Chy02g02701 914 MobiDBLite consensus disorder prediction 558 591 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02701 K14165 K14165; atypical dual specificity phosphatase [EC:3.1.3.16 3.1.3.48] - csv:101220184 1712.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02701 Chy-Chr2:29847718 Chy10g00579 Chy-Chr10:12406471 5.33E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g32 . . . Bda15g00697 Bpe12g00460 . . . . . Cma10g00021 . Car10g00014 . Sed12g2546 . . Bhi02g00621 Tan09g2433 Cmetu02g0933 . Hepe09g0013 . . Cla06g01782 Cam06g1976 Cec06g2025 Cco06g2033 Clacu06g1933 Cmu06g1874 Cre06g2686 . . Cone13ag0255 . . . . . . . . . . . . Bma08g00279 . Cmo10g00018 . . . . . . Cpe18g00937 . . . . . . . . . . . . . . Lsi06g01680 Csa01g00011 Chy02g02701 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy01g01195 . 4 277 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 2.4e-108 389.0
Chy02g02701 . 11 908 Protein tyrosine phosphatase (PTP) family AT5G23720 64.2 0.0e+00 1075.5
Chy11g01429 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.9 8.0e-41 163.7
Chy05g00525 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 6.0e-71 263.8
Chy10g01271 . 113 393 Protein tyrosine phosphatase (PTP) family AT3G52180 69.0 6.4e-115 410.6
Chy10g00338 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 1.9e-111 399.1
Chy04g01457 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Chy11g00950 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 5.8e-75 277.7
Chy05g00519 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 8.2e-69 257.3
Chy02g01674 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.8e-55 213.0
Chy06g02072 . 14 348 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 1.3e-101 366.7
Chy05g01416 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.6e-80 296.6
Chy05g01416 . 28 202 Protein tyrosine phosphatase (PTP) family AT5G56610 52.6 7.8e-45 177.2
Chy06g02072 . 51 226 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Chy11g00950 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 2.5e-78 288.5
Chy05g00519 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Chy02g01674 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 5.0e-58 221.1
Chy02g01674 . 1 201 Protein tyrosine phosphatase (PTP) family AT3G02800 68.6 8.1e-80 293.5
Chy11g00950 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 4.1e-55 211.5
Chy10g00579 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 2.2e-61 234.2
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy01g00080 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Chy02g00892 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 61.9 4.6e-195 677.9
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy11g00890 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.2 5.2e-71 264.6
Chy06g02132 . 27 311 Protein tyrosine phosphatase (PTP) family AT2G35320 64.2 2.5e-109 392.1
Chy08g00661 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.7 9.0e-277 949.5
Chy08g00661 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 3.4e-252 867.8
Chy08g00661 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 4.9e-184 641.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009525 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 2 1 1 1 1 1 1 1 1 2 1 0 1 1 1 31