Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02702 ATGGTTGGTGAGAGCACTGAGGCTGTTGGTGCTGGTGTTGGAGGAGGAAGCAGTGGGAACAAGATGCCAACCCTGGAAGAGTATGGCACAAATTTAACTAAGCTGGCTGAAGAGGGTAAATTAGATCCCGTTGTTGGAAGGCAGCAGCAAATAGAACGTGTAACCCAGATTTTGGGTCGGCGGACAAAAAATAATCCTTGCCTCATTGGTGAGCCTGGTGTTGGGAAAACTGCTATTGCAGAAGGTCTGGCGCAAAGGATTGCTAATGGGGATGTCCCTGAAACAATTGAAGGAAAGAAGGTTATAACCCTGGATATGGGGCTTCTCGTTGCTGGCACAAAGTATCGTGGAGAATTTGAGGAAAGATTGAAGAAACTGATGGAGGAAATTAAACAAAGTGATGAGATTATCCTTTTTATTGATGAGGTGCACACATTAATTGGAGCAGGGGCTGCAGAAGGAGCCATTGATGCGGCAAACATATTGAAACCTGCTCTCGCAAGAGGTGAACTGCAGTGCATTGGAGCCACGACATTGGATGAATACAGGAAGCACATTGAGAAAGACCCAGCCTTAGAAAGGAGATTTCAGCCGGTCAAAGTGCCGGAGCCGTCTGTGGATGAAACCATACAGATTTTGAAAGGCCTTAGGGAACGCTATGAAATTCACCACAAACTTCGTTACACAGATGAAGCATTAGTAGCTGCTGCGCAGCTGTCATACCAGTACATCAGTGATCGATTCTTGCCTGATAAGGCAATCGATTTAGTTGATGAAGCAGGTTCTCGAGTTCGCCTTCGTCATGCTCAACTACCTGAGGAAGCAAGGGAGCTTGAGAAAGAGCTGAGGCAGATCACAAAGGAGAAGAATGAGGCGGTTCGCAGTCAAGACTTTGAGAAGGCTGGGGAATTTCGTGATAGAGAAATGGAACTTAAGACTAAGATCTCTGCTCTAGTTGATAAGGGCAAGGAGATGAGCAAGGCTGAAAGCGAGGCAGGAGATGTAGGCCCTGTTGTGACTGAAGTTGATATTCAGCATATTGTTTCCTCCTGGACTGGCATTCCTGTTGAGAAAGTATCTACTGACGAATCTGATCGCCTCCTCAAAATGGAAGAGACCCTCCATAAGAGGGTTATTGGTCAAGATGAAGCAGTTCAAGCCATCAGTCGTGCCATACGCCGAGCTCGGGTTGGTTTGAAGAATCCCAATCGTCCAATTGCAAGCTTTATATTTTCTGGTCCAACTGGTGTTGGTAAATCTGAGTTAGCGAAAGCATTGGCTGCATACTATTTTGGGTCTGAAGAAGCAATGATTCGTCTTGATATGAGTGAATTTATGGAAAGGCATACAGTCTCGAAGCTCATTGGTTCCCCTCCTGGTTATGTTGGTTACACGGAAGGTGGTCAATTGACAGAGGCTGTTCGACGTCGTCCATACACAGTGGTGCTCTTTGATGAGATCGAGAAGGCTCATCCTGATGTATTCAACATGATGCTTCAAATTTTAGAGGATGGAAGGTTGACAGATAGCAAGGGCAGGACTGTAGACTTCAAAAATACACTTTTGATAATGACATCAAATGTGGGAAGCAGTGTTATAGAGAAGGGAGGTCGGAGAATGGGGTTCGACCTTGATTACGATGAGAAGGATAGTAGTTATAACCGAATCAAGAGCTTGGTGACAGAGGAACTGAAACAATACTTCAGGCCTGAGTTCTTGAATAGGTTGGATGAAATGATTGTCTTCCGTCAGCTCACAAAACTGGAAGTGAAGGAGATTGCGGATATAATGCTGAAGGAGGTGTTTGATAGGTTAAAAGCGAAAGAAATTGACCTTCAAGTGACAGAGAGATTTAGAGATAGGGTAGTGGAGGAAGGATATAACCCAAGCTACGGTGCGAGACCTTTGAGAAGGGCAATAATGAGACTTTTGGAGGACAGCATGGCAGAGAAGATGCTGGCAAGGGAGATCAAGGAGGGTGACTCGGTAATCGTGGATGTTGATTCGGACGGAAATGTTACAGTACTCAACGGCAGCAGTGGTGCTCCTGAATCCTTGCCGGATGCCATCCCTGTGTAA 2079 45.65 MVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGEFRDREMELKTKISALVDKGKEMSKAESEAGDVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVQAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRMGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKAKEIDLQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLPDAIPV* 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29868369 29876415 - Chy2G049690.1 Chy02g02702 222150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02702 692 ProSitePatterns Chaperonins clpA/B signature 2. 439 457 IPR028299 -
Chy02g02702 692 SMART AAA_5 62 202 IPR003593 -
Chy02g02702 692 SMART AAA_5 405 586 IPR003593 -
Chy02g02702 692 CDD AAA 379 527 - -
Chy02g02702 692 CDD AAA 45 197 - -
Chy02g02702 692 SMART ClpB_D2_small_2 585 675 IPR019489 -
Chy02g02702 692 Pfam AAA lid domain 205 305 IPR041546 -
Chy02g02702 692 Gene3D - 357 583 IPR027417 -
Chy02g02702 692 Coils Coil 116 136 - -
Chy02g02702 692 PANTHER ATP-DEPENDENT CLP PROTEASE 4 690 - -
Chy02g02702 692 Gene3D - 15 205 IPR027417 -
Chy02g02702 692 Gene3D UVR domain 271 335 - -
Chy02g02702 692 PANTHER CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC 4 690 - -
Chy02g02702 692 Gene3D - 207 351 - -
Chy02g02702 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 671 IPR027417 -
Chy02g02702 692 MobiDBLite consensus disorder prediction 1 25 - -
Chy02g02702 692 Gene3D - 585 681 - -
Chy02g02702 692 ProSiteProfiles UVR domain profile. 279 314 IPR001943 GO:0005515
Chy02g02702 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 299 IPR027417 -
Chy02g02702 692 Pfam ATPase family associated with various cellular activities (AAA) 67 183 IPR003959 GO:0005524|GO:0016887
Chy02g02702 692 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 454 472 IPR001270 GO:0005524
Chy02g02702 692 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 516 530 IPR001270 GO:0005524
Chy02g02702 692 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 483 501 IPR001270 GO:0005524
Chy02g02702 692 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 409 427 IPR001270 GO:0005524
Chy02g02702 692 Pfam AAA domain (Cdc48 subfamily) 404 578 IPR003959 GO:0005524|GO:0016887
Chy02g02702 692 ProSitePatterns Chaperonins clpA/B signature 1. 157 169 IPR018368 GO:0005524
Chy02g02702 692 Coils Coil 268 295 - -
Chy02g02702 692 Pfam C-terminal, D2-small domain, of ClpB protein 585 665 IPR019489 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02702 K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC - csv:101207083 1300.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02451 Chy-Chr2:28128836 Chy02g02702 Chy-Chr2:29868369 8.45E-27 dispersed
Chy02g02702 Chy-Chr2:29868369 Chy07g00338 Chy-Chr7:2756385 0 dispersed
Chy01g01040 Chy-Chr1:11265098 Chy02g02702 Chy-Chr2:29868369 0 transposed
Chy12g00169 Chy-Chr12:2032926 Chy02g02702 Chy-Chr2:29868369 0 transposed
Chy12g00170 Chy-Chr12:2035748 Chy02g02702 Chy-Chr2:29868369 1.31E-111 transposed
Chy02g02702 Chy-Chr2:29868369 Chy06g01564 Chy-Chr6:17630886 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g30 . . . . Bpe12g00459 . . . . . . . . . Sed01g1068 . Cpe04g01638 Bhi02g00620 Tan09g2434 Cmetu06g1260 . Hepe09g0012 . . . . . . . . . . . . . . . . . . . . . . . . Bma08g00280 . . . . . . . . . . . . . . . . . . . . . . . . . Chy02g02702 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002235 2 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 1 2 2 1 63