Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00061 ATGGACATCAACCTCGAGACTGCAGTAGATTCATGGTGGACAGCCGGAAATGGCAACGTCGTCGGAAAATGTACGTTAACTGGACGGAAAGAGAGGCGTAAGAGTATGAGCTCTTCATCAACTCAACTCTATGCTTCAAGAATGGGCATCTATGAGCCATTTCATCAGATCAACTCATGGCCAAATGCATTTGGTAGTCGACTAGATACGAGCATATCACCTATTACTAAAGTGGACGACTGTGTAGACAATAAACCCGAGTTTGTTCCTTTTGAATCGATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAGCCAATCGACGATAAGGTACAAAGACGTTTAGCACAAAACCGGGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAACTGGCACAGTTGGAGGAGGAGCTAGAAAGAACTAGGCAACAGAAGGTAAGATGGAGATCATTTTTTCTTGTACCGTCTTTATTGTGTATGTTAAACATGAATTCTTTGTTGCAGGGTACCGGCTGCTTAGTCGACACCAGTCACTTCGGATTCAGCGGATTGGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACATAGACAGATCAACGAACTTAGAAAGGCGCTGCAAGTTCATACAACTGATATAGAACTCCAAATTTTAGTGGAGAGCAGCTTAAACCATTACCACAATCTATTTTGCATGAAAGCCAAAGTTGCAAAGGCTGATGTTTTCTATTTAATGTCTGGTGTTTGGAGATCATCGGCAGAGCGATTTTTCCTCTGGATAGGCGGATTTCGCCCTTCGGAACTGCTAAATGTTCTCAAACCATACTTCGAGCCTTTAAATGAACAACAAAGAGCAGATATCCACAAGTTGCAACAGTCGTCTCGGCAAGCCGAAGATGCACTCACTCAAGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCGGTGATCCTATAGGAAGCTATATTTCTCAGATGGGTGATGGAATGGAGAAATTAGAAGCATTGGAGAGCTTCAAAAGCCAGGCAGACCATCTCAGGCAACAAACTTTGAAGAGAATGTCTCACCTCCTAACTACAAGACAGGCAGCACAAGGCTTGCTCGCTTTGGGCGAGTACTTCCACCGTCTCCGTGTTCTTAGTTCGCTCTGGGCCACTCGGCCTCGTGAACCTGCGTAG 1245 44.66 MDINLETAVDSWWTAGNGNVVGKCTLTGRKERRKSMSSSSTQLYASRMGIYEPFHQINSWPNAFGSRLDTSISPITKVDDCVDNKPEFVPFESMDHLESSQEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEEELERTRQQKVRWRSFFLVPSLLCMLNMNSLLQGTGCLVDTSHFGFSGLVNPGIAAFEMEYNHWVEEQHRQINELRKALQVHTTDIELQILVESSLNHYHNLFCMKAKVAKADVFYLMSGVWRSSAERFFLWIGGFRPSELLNVLKPYFEPLNEQQRADIHKLQQSSRQAEDALTQGMEKLHQNLSLSIAGDPIGSYISQMGDGMEKLEALESFKSQADHLRQQTLKRMSHLLTTRQAAQGLLALGEYFHRLRVLSSLWATRPREPA* 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 617777 621606 - Chy3G050410.1 Chy03g00061 222222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00061 414 ProSiteProfiles DOG1 domain profile. 201 409 IPR025422 GO:0006351|GO:0043565
Chy03g00061 414 SUPERFAMILY Leucine zipper domain 109 162 IPR046347 GO:0003700|GO:0006355
Chy03g00061 414 Coils Coil 129 163 - -
Chy03g00061 414 Gene3D - 109 164 - -
Chy03g00061 414 SMART brlzneu 106 166 IPR004827 GO:0003700|GO:0006355
Chy03g00061 414 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 108 152 IPR004827 GO:0003700|GO:0006355
Chy03g00061 414 PANTHER TRANSCRIPTION FACTOR TGA9 36 413 - -
Chy03g00061 414 Coils Coil 212 232 - -
Chy03g00061 414 Pfam bZIP transcription factor 109 149 IPR004827 GO:0003700|GO:0006355
Chy03g00061 414 PANTHER TRANSCRIPTION FACTOR TGA7 36 413 - -
Chy03g00061 414 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 113 128 IPR004827 GO:0003700|GO:0006355
Chy03g00061 414 Pfam Seed dormancy control 218 293 IPR025422 GO:0006351|GO:0043565
Chy03g00061 414 Coils Coil 300 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00061 Chy-Chr3:617777 Chy07g01307 Chy-Chr7:17728285 1.34E-129 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17638 PF14144 DOG1 1.30E-28 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00061 K14431 - csv:101217648 671.774