Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00065 ATGTTCTCGCCGGCTATCATTTCTCAATCACCGCCTTGCTTAACTTTTCAACCTACGTCAACGTCACTATCTGCACGGCGGACCTGTTCCAAATGGAACCTCACTACTTTCAACCGTTGTAAAAGCTCCACAAATTTCCCGTTCAATTTTGTCGAAGACCATTCCAAGGCTTTGCCGGTCGCTTGCACAACGGGAAAATGTACTACTACTGAAGAATACGCCGATGTCGAATCTTGCAGCAATCAGTCGGTGAGTGGATGTTTGAGTCCCTATTTGATTGGGGTTTGGCTTCGCTCTAGTCGTAGCGCCAAGAAATTAAGGGCGGTACATGCTTTCATTTTGCGAAATTTTACAAGTTTTGGGATTTATGTTGGAAACAATTTGCTTAGTTCTTACTTAAGATTGGGAATGTTGGTTGATGCTAGAAAGGTGTTCGATGAAATGCCAATGAGGAGTGTTGTGACCTGGACGGCTATTATTAATGGATATATTGATTTGGATTTGACTGAAGAAGCTTTAGCGTTGTTCAGTGATTCGGTCAAGAACGGGGTGCTAGCAAATGGGCAGATGTTTGTTTGCATCTTGAACTTGTGTGCTAAGAGGTTGGATTTTGAGCTTGGGAGGCAAATTCATGGCGTTATTGTGAAAGGTAATCGCGGGAATTTGATTGTTGACAGTGCCATTATTTACTTTTATGCACAATGTAAAGATATTTCCAGTGCTTTTGTTGCATTTGAACGTATGCGGAGGCGTGATGTTGTTTGTTGGACTTCCATGATTACTTCTTGTTCCCAACAAGGGCTTGGACGAGAAGCGATTTCGATGTTTTCAAATATGCTAAGCGATGGATTTCTACCAAATGAGTTTTCCGTATGCAGTGTTCTCAAGGCTTGTGGAGAAGAGAGGGAATTGAAGATTGGGAGACAGTTACATGGTTTGATAATTAAAAAAATAATCCAGAATGATGTTTTTGTTGGGACTTCATTGGTTGATATGTATGCCAAGTGCGGAAACTTGGCGGATTCTAGAGAAGTATTCGACGGGATGAGGAATAGGAACACGGTTACCTGGACGTCAATCATAGCTGGTTATGCACGGGAGGGGCTCGGTGAGGAGGCTCTGAACCTCTTTAGGTTGATGAAGAGGCAAAGGATTCCTGCCAATAACTTAACCATTGTAAGTATTCTCCGCGCTTGCGGTTCGATTGAGGCGTCATTGACTGGGAGGGAAGTTCATGCCCAGATTGTAAAAAATTCATTTCAAACTAATATACACATAGGAAGCACTCTAGTTTGGTTCTACTGTAAATGTAGGAATCAACTTAAGGCCTCGATGGTTCTTCAGCTGATGCCGCTTAGAGATGTGGTTTCTTGGACAGCCATCATTTCTGGATGTGCTCATCTTGGGCACGAGTCCGAAGCGCTTGAATTTCTAAAAAACATGATAGAGGAAGGTGTTGAACCAAACTCCTTTACTTATTCGTCAACTTTAAAAGCGTGTGCCAAGATGGAAGCTGTCCTCCAAGGGAAAATGATCCACTCTTCCGCAAACAAAACATCTGCGTTGTCCAATGTTTTTGTGGGAAGTGCACTGATTTACATGTATGCAAAATGTGGATATGTAACCGAAGCTTCTCAAGTTTTCGACAGTATGCCGGTGAGGAATTTGGTTTCTTGGAAGGCCATGATTTTGTGTTATGCTAGGAACGGTCTGTGCCGAGAGGCATTAAAGCTCATGTATCGGATGCAGGCTGAAGGTTTCGAAGTGGACGATTACATTCTTGGAACAGTTTATGGAGCTTGTGGAGATGTGAAATGTGATGTGGATTCATCACTTGAATATAGGTTGCAAACTCATTGA 1860 42.63 MFSPAIISQSPPCLTFQPTSTSLSARRTCSKWNLTTFNRCKSSTNFPFNFVEDHSKALPVACTTGKCTTTEEYADVESCSNQSVSGCLSPYLIGVWLRSSRSAKKLRAVHAFILRNFTSFGIYVGNNLLSSYLRLGMLVDARKVFDEMPMRSVVTWTAIINGYIDLDLTEEALALFSDSVKNGVLANGQMFVCILNLCAKRLDFELGRQIHGVIVKGNRGNLIVDSAIIYFYAQCKDISSAFVAFERMRRRDVVCWTSMITSCSQQGLGREAISMFSNMLSDGFLPNEFSVCSVLKACGEERELKIGRQLHGLIIKKIIQNDVFVGTSLVDMYAKCGNLADSREVFDGMRNRNTVTWTSIIAGYAREGLGEEALNLFRLMKRQRIPANNLTIVSILRACGSIEASLTGREVHAQIVKNSFQTNIHIGSTLVWFYCKCRNQLKASMVLQLMPLRDVVSWTAIISGCAHLGHESEALEFLKNMIEEGVEPNSFTYSSTLKACAKMEAVLQGKMIHSSANKTSALSNVFVGSALIYMYAKCGYVTEASQVFDSMPVRNLVSWKAMILCYARNGLCREALKLMYRMQAEGFEVDDYILGTVYGACGDVKCDVDSSLEYRLQTH* 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 662632 664491 + Chy3G050450.1 Chy03g00065 222226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00065 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 170 400 - -
Chy03g00065 619 Pfam PPR repeat family 453 502 IPR002885 -
Chy03g00065 619 Pfam PPR repeat family 251 298 IPR002885 -
Chy03g00065 619 Pfam PPR repeat family 352 399 IPR002885 -
Chy03g00065 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Chy03g00065 619 TIGRFAM PPR: pentatricopeptide repeat domain 154 186 IPR002885 -
Chy03g00065 619 TIGRFAM PPR: pentatricopeptide repeat domain 456 490 IPR002885 -
Chy03g00065 619 TIGRFAM PPR: pentatricopeptide repeat domain 254 288 IPR002885 -
Chy03g00065 619 TIGRFAM PPR: pentatricopeptide repeat domain 557 590 IPR002885 -
Chy03g00065 619 TIGRFAM PPR: pentatricopeptide repeat domain 126 152 IPR002885 -
Chy03g00065 619 TIGRFAM PPR: pentatricopeptide repeat domain 355 388 IPR002885 -
Chy03g00065 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 589 IPR002885 -
Chy03g00065 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 170 400 - -
Chy03g00065 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Chy03g00065 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 100 298 - -
Chy03g00065 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 395 602 - -
Chy03g00065 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 272 501 - -
Chy03g00065 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 395 602 - -
Chy03g00065 619 Gene3D Tetratricopeptide repeat domain 409 514 IPR011990 GO:0005515
Chy03g00065 619 Gene3D Tetratricopeptide repeat domain 271 407 IPR011990 GO:0005515
Chy03g00065 619 Pfam PPR repeat 126 151 IPR002885 -
Chy03g00065 619 Pfam PPR repeat 557 587 IPR002885 -
Chy03g00065 619 Pfam PPR repeat 529 555 IPR002885 -
Chy03g00065 619 Pfam PPR repeat 154 184 IPR002885 -
Chy03g00065 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 100 298 - -
Chy03g00065 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 272 501 - -
Chy03g00065 619 Gene3D Tetratricopeptide repeat domain 97 212 IPR011990 GO:0005515
Chy03g00065 619 Gene3D Tetratricopeptide repeat domain 515 615 IPR011990 GO:0005515
Chy03g00065 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Chy03g00065 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00065 - - - csv:101216949 1227.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00065 Chy-Chr3:662632 Chy06g00924 Chy-Chr6:6789137 5.19E-47 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g351 . . . . . . . . . . . . . . . . . Bhi04g02501 . . . Hepe02g3441 . Lcy10g2332 . . . . . . . . . Cone17ag1248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00766 . . . . . . . . Chy03g00065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012853 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00065 Chy_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0