Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00068 ATGTTGAAGCAAATGTTGGATTATGCTTTCCAAGTTTCATCATGCACTTCCTTGCAGCCTAAAACCAAGCTTCATGTTGAAAGTTTGAAAAGCATGGAGGAGAACAAAACTGATCAATGGACAAAAGTCATGCGAAGCGTCAATATGGAAAACTTGAGGACTGGGTATTTATTCCCTGAGATATCTAGACGAGAACATGAACACTCTGAGAAGTACCCAAATGCGAAGATAGTTAAACTTGGAATAGGTGATACTACCGAGCCTATACCAGAGTGTATTGCATCTGCCATGGCAAAACAAGCAATGGCATTATCAACTGTTGAAGGCTACAGTGGGTATGGAGACGAGCAGGGCGAAAAGGCACTTAGGAAGAGAATTGCGGAAAAGTTTTACAGAAACATGGACGTAAAGTGGGAAGAAGTGTTCGTCTCGGATGGAGCTCAATGTGACATCTCTCGTGTTCAGATGCTTTTTGGATCACATGTAACGGTGGCTGTACAAAATCCCTCTTTCCCCGCATACATAGACTCGAGCGTGATTTTGGGACGAGCGGGGAACCTTCAAGGCCAAAACGGTAAGTATGAAAGAATAGTGTACATGGAGTGTACACCCCAAAATGGTTTCTTTCCAGATTTATCCAACACTCCCAGAACCGATATTATCTTCTTCTGCTCTCCCAATAATCCCACCGGAACAGCCGCCTCCGCTGCTCAACTCCGCCGTCTCGTCGATTTCGCCACCGCCAATGGTTCCATCATCGTCTACGATTCCTCCTACGCCGCTTACATCTCCGACGGCAGTCCTACCTCCATCTTCCAAATTCCTGGAGCCAAACAGGTCGCAATTGAGATTTCTTCATTCTCCAAATTCGCTGGCTTCACCGGCGTCCGTCTCGGCTGGACGGTTGTTCCGAAGGAGCTGTCGTATTCGAATGGATTTCCGATCATAAAGGATTACGATCGCATTGTCTGTACGTGTTTTAATGGCGCCTCCAATATCGTTCAAGCTGGTGGTCTTGCTTGCCTTTCCACTGAAGGTTTCCAGGCGGTGAGCAAAGTGTTGAATCACTACAAAGAGAACGCGAAGATTCTAAGAGAGGCGTTCCGAGGTTTGGGAATGGAGGTGTACGGAGGCCAAAACGCACCATATCTATGGGTCCATTTTCCAGGTTCAAGCTCTTGGGAGGTATTCGCTGAGATTCTAGAGAAGACCCATATCTTAACCATTCCGGGGAGGGGGTTCGGACCCGGAGGTGAGTCGTACATCCGATTTCCACCACTGCTAATAAGACGTGCAAAGGCACGAGGGACAATTGCATTCCATCTTAGTTTCAATTTGAAATTATCCAAATCAATGGGTGGTACGTTCAATCCACAAATTTTGGTAGACAAGCTAGCCAGGCTTAACAACTCACAGGCGAGCATTGAGACTTTATCCCACTGGTGCATATTTCACATGAACAAAGCCAAGCAAGTTGTAGAAACATGGGATAAGCAGTTTCATTGTTCTCCAAGTGAGCAGAGGTTGGCATATCTGTATCTTGCTAATGACATTTTGCAGAACAGTAGGAGAAAAGGCTCAGAGTTTGTTGGTGAATTTTGGAAAGTCCTACCTGATGCACTGCGTGATGTAATTGGAAATGGAGATGAATTTGGAAGAAATGCTGCCCTACGACTGATTGGCATTTGGGAAGAAAGAAAAGTTTTTGGATCTCGAGGACAGAGTCTTAAAGAAGAGATAATGGGAAAACATTTGGAAACTGGTAATCGTAATGGGAAGCCATTCAACAGTAAACTGAAACAATCTGCCAGTGTGTCATTGGATAAAATAGTTTCTGGTTATCAAGTTGTTTATGGAAAGGAGATTGATGAAGATGCAGTATTGAGCAAATGCAGGAATTCTATTAGCTATCTCGAGAAATTGGACAAAGAAATTGGCGCTGATGTCAATTCAGGGCAATACCGTGGATCTTCAATTGCAGATGATTTGCGGGGACATCATACAATTTTGAGGGACTGCATCGAACAATTAACAACAATTGAAACATCAAGGGCGAGCCTTGTGTCTCATCTGAGAGAGGCTCTTCAAGAACAGGAATTCAAGTTGGAGCAAGTCCGAAATCAACTTCAGGCTTCTCATTCCCAGTCGGAACAAACTCAGAATCTCTGCCGCCAGTTCTTAAATGGTGAAAATGTGCAACCTATGACTGAAGAGGGATCAAAAGATGCTCAGACCTCAGTAGCACCTCACAGCCTTGTATCAAGGGAGAGAGAACAATCAGCGCCAGTAATGTATGCAGCCTCAGTACCTTTCCCTTCAAAACCTGGGCCGAATGAGGAAGATCCCCGCAAGTCCGCTGCTGCTGCAGTGGCAGCAAAGCTCACAGCATCGACATCCTCGGTACAGATGCTCTCTTATGTCCTATCTTCGCTGGCATCAGAGGGCGTAATTGGAAATCCAAATAAAGATTTACCCGGAGATTATCCGTCTGAAAAGAGGCCGAAACTTGAAAATGACCAGTTGCCTTACCCGCTGCCTCCCAATCCTCAGCGACCACCAGTCTCTTCCTTCCCTCACCCAGAGTCTCTCCAACATAACACTTCATCCACCAGTCAACAATACACTCCTTCTGACCCTCCACCTCCTCCGTCATCATCTCCCCCGCCCATGCCTCCGTTACCTCCTGTCTCACAGTTCCCTCTGCCCCAGTTCACACAGAATGCAGGGTCAGTAAGTAGCATACCGATTCCTTACAGCTACAGTATGACACAATCACTGCCACCATTGGCAATGCCTGGCTATCCAAATGCAGGTGCCCCAGTGACCGGGATGTCTCCTTTTACAATACCAACAAATTCTTACCAGAATTTTCAGGCTCCAGATGGTAGTTTCTATAGTCAGTCTTCATCGATGCCAATGGCACCAATATCTAGGCAATAG 2940 45.88 MLKQMLDYAFQVSSCTSLQPKTKLHVESLKSMEENKTDQWTKVMRSVNMENLRTGYLFPEISRREHEHSEKYPNAKIVKLGIGDTTEPIPECIASAMAKQAMALSTVEGYSGYGDEQGEKALRKRIAEKFYRNMDVKWEEVFVSDGAQCDISRVQMLFGSHVTVAVQNPSFPAYIDSSVILGRAGNLQGQNGKYERIVYMECTPQNGFFPDLSNTPRTDIIFFCSPNNPTGTAASAAQLRRLVDFATANGSIIVYDSSYAAYISDGSPTSIFQIPGAKQVAIEISSFSKFAGFTGVRLGWTVVPKELSYSNGFPIIKDYDRIVCTCFNGASNIVQAGGLACLSTEGFQAVSKVLNHYKENAKILREAFRGLGMEVYGGQNAPYLWVHFPGSSSWEVFAEILEKTHILTIPGRGFGPGGESYIRFPPLLIRRAKARGTIAFHLSFNLKLSKSMGGTFNPQILVDKLARLNNSQASIETLSHWCIFHMNKAKQVVETWDKQFHCSPSEQRLAYLYLANDILQNSRRKGSEFVGEFWKVLPDALRDVIGNGDEFGRNAALRLIGIWEERKVFGSRGQSLKEEIMGKHLETGNRNGKPFNSKLKQSASVSLDKIVSGYQVVYGKEIDEDAVLSKCRNSISYLEKLDKEIGADVNSGQYRGSSIADDLRGHHTILRDCIEQLTTIETSRASLVSHLREALQEQEFKLEQVRNQLQASHSQSEQTQNLCRQFLNGENVQPMTEEGSKDAQTSVAPHSLVSREREQSAPVMYAASVPFPSKPGPNEEDPRKSAAAAVAAKLTASTSSVQMLSYVLSSLASEGVIGNPNKDLPGDYPSEKRPKLENDQLPYPLPPNPQRPPVSSFPHPESLQHNTSSTSQQYTPSDPPPPPSSSPPPMPPLPPVSQFPLPQFTQNAGSVSSIPIPYSYSMTQSLPPLAMPGYPNAGAPVTGMSPFTIPTNSYQNFQAPDGSFYSQSSSMPMAPISRQ* 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 690781 714274 + Chy3G050480.1 Chy03g00068 222229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00068 979 CDD CID_RPRD_like 458 581 - -
Chy03g00068 979 Coils Coil 688 715 - -
Chy03g00068 979 Pfam CID domain 460 571 IPR006569 -
Chy03g00068 979 CDD AAT_like 78 435 - -
Chy03g00068 979 MobiDBLite consensus disorder prediction 840 856 - -
Chy03g00068 979 Pfam Aminotransferase class I and II 76 423 IPR004839 GO:0009058|GO:0030170
Chy03g00068 979 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC-RELATED 11 425 - -
Chy03g00068 979 SUPERFAMILY PLP-dependent transferases 55 426 IPR015424 -
Chy03g00068 979 SMART 558neu5 460 581 IPR006569 -
Chy03g00068 979 MobiDBLite consensus disorder prediction 815 915 - -
Chy03g00068 979 MobiDBLite consensus disorder prediction 875 899 - -
Chy03g00068 979 PANTHER AMINOTRANSFERASE 11 425 IPR019942 GO:0008483
Chy03g00068 979 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 45 426 IPR019942 GO:0008483
Chy03g00068 979 Gene3D Aspartate Aminotransferase, domain 1 57 424 IPR015422 GO:0003824
Chy03g00068 979 MobiDBLite consensus disorder prediction 734 753 - -
Chy03g00068 979 Gene3D - 453 582 IPR008942 -
Chy03g00068 979 MobiDBLite consensus disorder prediction 734 761 - -
Chy03g00068 979 MobiDBLite consensus disorder prediction 857 874 - -
Chy03g00068 979 Gene3D - 87 344 IPR015421 GO:0003824
Chy03g00068 979 MobiDBLite consensus disorder prediction 900 915 - -
Chy03g00068 979 MobiDBLite consensus disorder prediction 948 979 - -
Chy03g00068 979 ProSiteProfiles CID domain profile. 453 585 IPR006569 -
Chy03g00068 979 SUPERFAMILY ENTH/VHS domain 461 568 IPR008942 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00068 K15559 RTT103; regulator of Ty1 transposition protein 103 - csv:101215983 959.518
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00068 Chy-Chr3:690781 Chy07g01752 Chy-Chr7:21147087 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g354 . . . . . . . . . . . . . . Sed11g2297 . . Bhi04g02497 Tan11g0087 Cmetu03g1388 . Hepe02g3438 . Lcy10g2329 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00761 Cam11g0795 Cec11g0776 Cco11g0782 Clacu11g1063 Cmu11g0922 Cre11g1239 . . Chy03g00068 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008611 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00068 Chy_Chr03 FPKM 2.541803 3.517391 6.11705 6.206126 10.082099 9.129813 10.495842 1.916914 1.844919 2.09258