Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00134 ATGAGTTTTGTCTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCTGAAAGGCGTGCAATGCGGGTTCAGGCAGCACGTCCTGTTAACTCAAACTCGCTTGCCTTTCTTGTCACAGTCCTTTTGCTATTCATGATATTAAACTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCGCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGTCTTCTTGGTCACACTGAATTAAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTAGATCGGGAATTTGACGATCTAGATTATGAAACCTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATAAATGCTCTTCCCGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACTCCCCTGTGAATCAGCAGGCTTCATCTTCAGAATCTAATGAGAAGAGACAAGATTCAGTTAATGCAGTTGGCAGTACCAAAACCTCCGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCGTGGCTGCGACAGCAGGGAACGTGCCCCGTCTGTAAATTCAGAGCAGTATCCGGATGGTCAGAACAGGAACAAGGCGAAACCGATGCTTATATGGTTTAG 828 45.17 MSFVFRGTRVPDIENGLSGFIPERRAMRVQAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDSPVNQQASSSESNEKRQDSVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQEQGETDAYMV* 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1251727 1254059 - Chy3G051140.1 Chy03g00134 222295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00134 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 259 IPR013083 -
Chy03g00134 275 SUPERFAMILY RING/U-box 208 261 - -
Chy03g00134 275 SMART ring_2 214 254 IPR001841 -
Chy03g00134 275 MobiDBLite consensus disorder prediction 171 205 - -
Chy03g00134 275 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Chy03g00134 275 CDD RING-H2_PA-TM-RING 213 255 - -
Chy03g00134 275 Pfam Ring finger domain 213 255 IPR001841 -
Chy03g00134 275 MobiDBLite consensus disorder prediction 176 205 - -
Chy03g00134 275 PANTHER TARGET OF ERK KINASE MPK-1 1 274 - -
Chy03g00134 275 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00134 Chy-Chr3:1251727 Chy06g00389 Chy-Chr6:2621835 8.79E-15 dispersed
Chy03g00134 Chy-Chr3:1251727 Chy09g00248 Chy-Chr9:2041208 6.60E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00134 K16283 - csv:101216306 503.442