Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00140 ATGGCGAATTGGGGTGGAATAGGGAATCTTGCAATCACACCACTTGAACTTCAAAAAACAGAGCAACAACAAAGTACTAAGAATTATGAAGATGGGGATGGAGTTAAACCCAAGAGGCGGCCACGAGGCCGCCCACCAGGCTCCAAAAACAAGCCGAAGCCACCAATTCTCATTGCCAAAAACACTCCCAACACCCTTCAAACCCACGTTTTCGAAATCGCCACCGCCACCGACATTGCCTACTCCATTTCCACCTTCGCCCAACGCCGCCGCCGTGGGGTTTCCATTCTCAGCGCCACCGGCCTCGTCGCTGACATCACTCTCCGTCAACCCTCCGGCGTCATCACCCTCCACCAACGCTTCGAGATCTTGTCTCTCTCTGGCGCCTTCCTTCCCACGCCCTCCCCCCACGGAACTTCCGCATTGACCGTCTATCTCGCTGGCGGCCAAGGGTGTGTCGTCGGAGGCCTCGTCGCCGGTCCCCTAATAGCTGCCGGCCCTGTGGTAGTAGTTGCAGCTTCATTTACCAATGCTATGTATGAAAAATTGCCGATGGAAGAAGATGAAGAGAAAACAGAGGAGGGTAAGCAATTGGAAGAAAACATTAATGGAAACAATTCAATGGGAGAATCATCATCATTAGCAGCAGCAAGTTCTATGGGAGTTTATAATTTGATTCCTAACACTCAAATTTCACAAGAAATGTTTTGGGCTCCTCCTCCTCCATCTTATTAA 735 50.61 MANWGGIGNLAITPLELQKTEQQQSTKNYEDGDGVKPKRRPRGRPPGSKNKPKPPILIAKNTPNTLQTHVFEIATATDIAYSISTFAQRRRRGVSILSATGLVADITLRQPSGVITLHQRFEILSLSGAFLPTPSPHGTSALTVYLAGGQGCVVGGLVAGPLIAAGPVVVVAASFTNAMYEKLPMEEDEEKTEEGKQLEENINGNNSMGESSSLAAASSMGVYNLIPNTQISQEMFWAPPPPSY* 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1282191 1282925 - Chy3G051200.1 Chy03g00140 222301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00140 244 Pfam Plants and Prokaryotes Conserved (PCC) domain 68 177 IPR005175 -
Chy03g00140 244 MobiDBLite consensus disorder prediction 185 212 - -
Chy03g00140 244 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 23 244 IPR014476 GO:0003680
Chy03g00140 244 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 23 244 - -
Chy03g00140 244 MobiDBLite consensus disorder prediction 13 59 - -
Chy03g00140 244 ProSiteProfiles PPC domain profile profile. 63 196 IPR005175 -
Chy03g00140 244 MobiDBLite consensus disorder prediction 15 30 - -
Chy03g00140 244 SUPERFAMILY AF0104/ALDC/Ptd012-like 64 189 - -
Chy03g00140 244 PIRSF ESCAROLA 13 239 IPR014476 GO:0003680
Chy03g00140 244 Gene3D - 67 194 - -
Chy03g00140 244 CDD DUF296 67 163 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00140 Chy-Chr3:1282191 Chy10g00525 Chy-Chr10:11822713 8.01E-69 dispersed
Chy03g00140 Chy-Chr3:1282191 Chy06g00280 Chy-Chr6:1884621 5.71E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00140 - - cmo:103485519 408.297