Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00143 ATGGACTTTCTTCACCTCAAAGGCGCCTCCACCGCTCCCGCTCCCGCTGCCGATAATACAACCAGTGCTTCGTCGTCGTCGTCGTCGTCTGGTGGACGGAAACGCCGCAGTATGCATTCGGTTTCACGGAGGTGTGAAAATGAAGAGCATGAAAACAGAGGACAGAGGAAAGATGATGATGATGATGATGATGATGATGATGAAGATAACGATGTTGTTGATGATGATGTTAAATATGGAGTCACTTCTGTTTGTGGAAGAAGAAGAGAAATGGAGGATATGGTTTCTGTTCATCTTTACTTTACTAATGAAAAGAATCTACCCCAAATTCCCATTCACTTTTTTGGGGTCTTCGACGGCCATGGCTGCTCTCATGTTTCGATGAGCTGTATGAATCGAATGCATGAAATAGTGAAAGAAGAGATTGATGAAAACGAATTGGAAGAAACAGAGGAATGGAAGAAAATAATGAAGAGAAGCTTTAGGCGTATGGATGAGGAAGTGATGAATGAGTACTCAAATAGTATTAAACAGAGAGATGCTGCCGTTGCCGGCTCCTCCTCCTCCTCGTCCCACAATATTAGTTGCAGATGCGAACTCCAAACTCCTCATCAATATGACACCGTCGGATCAACTGCTCTGATTGTGTTATTGATGTCCCATAAGCTCATCATCGCCAACTGCGGCGATTCCCGCGCCGTCCTTTCCCGGAAAGCTACCGGAATCCTCCCTCTGTCCTCCGACCATAAGCCGGATCGACCAGATGAATTGTGGAGAATAGAATCTGGAGGTGGGCACGTGATCCATTGGGAAGGGGCGAGAGTGTTGGGAGCGATAGGCGACAGTTCTTTAAAACCTTACGTAATATCAGAGCCGGAGGTGGTGGTAATGGATCGAAGAATGGAGGATGAGTTTATCATACTGGCTACTGACGGCTTGTGGGACGTCGTTACAAACGAAACCGCGTGCGACGCAGTACGAACATGCATACGAGCACAACGAGCGTCCTCGTCGTCTTTGTTAGAAGAGTCATCACGATCTATGGTCAGCGGCTCTGACAAAACATGTTCCGACGCCTCTATCTTGCTTACAAAGTTGGCGATCGCCAAGCATAGTTCAGATAACATTAGCATTGTGGTTATAGATTTGAGAAATACACATCATAATCATCATCATCACCACTGCTAA 1188 46.21 MDFLHLKGASTAPAPAADNTTSASSSSSSSGGRKRRSMHSVSRRCENEEHENRGQRKDDDDDDDDDDEDNDVVDDDVKYGVTSVCGRRREMEDMVSVHLYFTNEKNLPQIPIHFFGVFDGHGCSHVSMSCMNRMHEIVKEEIDENELEETEEWKKIMKRSFRRMDEEVMNEYSNSIKQRDAAVAGSSSSSSHNISCRCELQTPHQYDTVGSTALIVLLMSHKLIIANCGDSRAVLSRKATGILPLSSDHKPDRPDELWRIESGGGHVIHWEGARVLGAIGDSSLKPYVISEPEVVVMDRRMEDEFIILATDGLWDVVTNETACDAVRTCIRAQRASSSSLLEESSRSMVSGSDKTCSDASILLTKLAIAKHSSDNISIVVIDLRNTHHNHHHHHC* 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1306793 1308188 + Chy3G051230.1 Chy03g00143 222304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00143 395 SMART PP2C_SIG_2 92 383 IPR001932 -
Chy03g00143 395 SMART PP2C_4 66 381 IPR001932 -
Chy03g00143 395 SUPERFAMILY PP2C-like 77 385 IPR036457 -
Chy03g00143 395 ProSitePatterns PPM-type phosphatase domain signature. 114 122 IPR000222 GO:0043169
Chy03g00143 395 ProSiteProfiles PPM-type phosphatase domain profile. 78 383 IPR001932 -
Chy03g00143 395 PANTHER ALPHABET, ISOFORM E-RELATED 22 387 - -
Chy03g00143 395 MobiDBLite consensus disorder prediction 58 74 - -
Chy03g00143 395 MobiDBLite consensus disorder prediction 14 35 - -
Chy03g00143 395 Pfam Protein phosphatase 2C 78 375 IPR001932 -
Chy03g00143 395 PANTHER PROTEIN PHOSPHATASE 2C 3 22 387 - -
Chy03g00143 395 MobiDBLite consensus disorder prediction 41 57 - -
Chy03g00143 395 MobiDBLite consensus disorder prediction 1 76 - -
Chy03g00143 395 Gene3D - 67 392 IPR036457 -
Chy03g00143 395 CDD PP2Cc 78 383 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00143 Chy-Chr3:1306793 Chy06g00889 Chy-Chr6:6418046 1.82E-67 dispersed
Chy12g00232 Chy-Chr12:2656877 Chy03g00143 Chy-Chr3:1306793 1.47E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00143 K14497 - csv:101220425 606.675