Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy03g00162 | ATGACGACCGTCCAAGCCTCCCACGTTGTCGCAATGGATGTAGAACAACACCAACAACCCCCTCGCACTGACTCCGATGATGTGCGGCGGTGTTCGGTCCACTCCAGGGCTGACATTCTGGAGGAAGATGGGGTGGCGGTGACGGCGGCGGCGGAGAAAAGAAGGGGATCCTCTGTGTCGGAGTGCTCTGTTGAGATGGATCTCGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAGGGATTGCAGGATTTGTCATCTGAGTTTGGATGCTTCTAATCATGAATCTGGAATCCCTATTGAGTTGGGTTGTTCTTGTAAAGATGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGGCTTGGTTCAAGATTAAGGGCGACATCACATGTGAGATCTGTGGATCCATTGCACACAATGTTACTGGTACTTATGAAGCCGATTCCACAGAGCAACGCAATGAACCAAACGAATCAACAACAGCAACTGCTACAGCTGCTATTGTGATGCCACCACACTCTACAGAGGCTCGAAACTTCTGGCAAGGGCACAGGTTCCTGAACTTCTTACTTGCCTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAA | 642 | 49.07 | MTTVQASHVVAMDVEQHQQPPRTDSDDVRRCSVHSRADILEEDGVAVTAAAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNESTTATATAAIVMPPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS* | 214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1464650 | 1467104 | - | Chy3G051420.1 | Chy03g00162 | 222323 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy03g00162 | 213 | CDD | RING_CH-C4HC3_MARCH | 86 | 138 | - | - | |
| Chy03g00162 | 213 | PANTHER | ZINC FINGER, RING-CH-TYPE | 3 | 213 | - | - | |
| Chy03g00162 | 213 | Pfam | RING-variant domain | 86 | 137 | IPR011016 | GO:0008270 | |
| Chy03g00162 | 213 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 74 | 147 | IPR013083 | - | |
| Chy03g00162 | 213 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 78 | 144 | IPR011016 | GO:0008270 | |
| Chy03g00162 | 213 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 3 | 213 | - | - | |
| Chy03g00162 | 213 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Chy03g00162 | 213 | SUPERFAMILY | RING/U-box | 83 | 140 | - | - | |
| Chy03g00162 | 213 | SMART | ringv_2 | 85 | 138 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy03g00162 | Chy-Chr3:1464650 | Chy12g00838 | Chy-Chr12:13657421 | 2.39E-24 | dispersed | |
| Chy12g00249 | Chy-Chr12:2769552 | Chy03g00162 | Chy-Chr3:1464650 | 1.76E-51 | wgd | |
| Chy03g00162 | Chy-Chr3:1464650 | Chy04g02201 | Chy-Chr4:26953978 | 2.77E-71 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy03g00162 | - | - | csv:101207404 | 428.328 |