Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00174 ATGGCAACGACCGAGACCACAGTTCTGCAATTTTCACAGTCTTCTAACACTCTATCTGCCAAGGTTCATCCTTTGGTTATCTTCAACATTTGTGATTGCTATGTCAGGCGCCCCGACCAGGCCGATCGAGTCATTGGTACTCTTCTTGGCTCGGTTTTACCTGATGGAACTTTTGATATTCGTAACTCTTATGCTGTTCCCCATAATGAGTTCTCGGATCAGGTTGCGCTGGATATTGACTATCATCACAATATGTTAAGTTCACACCAAAAAGTTAATCCAAAGGAAGTTATCGTTGGATGGTACTCCACTGGTACGGGAGTAACGGGTGGCAGTGCATTGATACACGAATTTTATTCAAGAGAAGTTGCAAACCCTATTCACCTTACTGTTGATACTGGGTTTAAGAATGGTGACGGGACGATAAAAGCATATATCTCTGTCAATTTGTCCTTGGGAGATAGACAGCTTGCTGCTCAGTTTCAAGAAATTCCTTTGGATCTTCGAATGGTCGAAGCTGAGAGACTTGGATTTGATATTCTGAAGACAACTTCTGTTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTGCTTGCCTTAATTGACGACATTTACAAATATGTTGATAACGTTGTGGAAGGGCACGTTGAGGCCGACAACACGATAGGGAGATTTCTAGCTGACACTGTAGCATCTCTTCCAAAACTGTCGCCGGCTGCTTTTGATAAGCTGATGAATGACAATGTGCAGGACCATTTGCTGTTGCTGTATTTGTCAAGTATTACCCGGACACAGTTGAGCTTGGCTGAAAAGTTGAATACCGCAGCTCAGATCCTGTAA 858 42.89 MATTETTVLQFSQSSNTLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTFDIRNSYAVPHNEFSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGTGVTGGSALIHEFYSREVANPIHLTVDTGFKNGDGTIKAYISVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDILKTTSVDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEADNTIGRFLADTVASLPKLSPAAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL* 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1597448 1600358 - Chy3G051540.1 Chy03g00174 222335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00174 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 121 IPR000555 GO:0005515|GO:0008233|GO:0008237
Chy03g00174 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 17 284 - -
Chy03g00174 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Chy03g00174 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Chy03g00174 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 17 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Chy03g00174 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Chy03g00174 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Chy03g00174 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Chy03g00174 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01041 Chy-Chr1:11312216 Chy03g00174 Chy-Chr3:1597448 2.84E-10 dispersed
Chy03g00174 Chy-Chr3:1597448 Chy04g02225 Chy-Chr4:27063819 4.20E-32 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00174 K03249 - csv:101205957 556.984