Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00195 ATGAGAGGTTGGCATGAAACTCGTTCTTCATCTTCTTGTGCAGCTTGCAAATTGTTGAAAAGAAGATGTATTCCCACCTGTATTTTTGCTCCTTATTTTAGGTCTGATGAGCCAAAGAAATTTGCCAAAGTTCATAAGGTTTTTGGGGCAAGTAATGTTAGTAAGATTTTGACTGAAGTTCCTGAAGAACAGAGAGAAGATACTGTTAATTCTTTAGCTTATGAAGCTGAAGCCAGGCTTAGAGATCCTGTTTACGGCTGCATTGGTGCTATAGCTTTGTTGCAGACTAAAATGGTGGAGCTTCAACATGACCTTGCTCTTGCTAAAGCTCGTCTCGCTCAAATAACAAATACCACACGAACACTTATCAAACAACCTTCTCATGGAGAGTTGAGAGAAATCAATATTTTGTCAGTCATGTCTGGAAAGTGTGTAATGTAG 441 39.0 MRGWHETRSSSSCAACKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLAQITNTTRTLIKQPSHGELREINILSVMSGKCVM* 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1805672 1823892 - Chy3G051750.1 Chy03g00195 222356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00195 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 126 - -
Chy03g00195 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 126 - -
Chy03g00195 146 Coils Coil 91 118 - -
Chy03g00195 146 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Chy03g00195 146 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00195 Chy-Chr3:1805672 Chy05g00814 Chy-Chr5:11625989 3.81E-49 dispersed
Chy03g00195 Chy-Chr3:1805672 Chy04g01431 Chy-Chr4:20958581 7.56E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17647 PF03195 LOB 8.70E-39 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00195 - - csv:101222226 232.261