Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00200 ATGGCAGCACCATCGTCTCTATATTTGTTTGCCATTTTAGTCCTCTTTGCTTCGGCGGCGGCCTTGTCCTTGGCTCACCCACAAACCCATCGCCATCAATTTGTTATTCAAGCTACGCCAGTGAAGAGGTTGTGCAAAACCCATAATGCTATTACGGTGAATGGGCAATTCCCTGGACCGACCTTGGAGATGCGCAATGGTGATACTCTCATTGTCACTGTCATCAATAAAGCCAAGTACAATGTCACAATTCATTGGCATGGGATTAGACAGCTTAGAACTGGATGGGCTGATGGACCTGAGTTCGTGACTCAGTGTCCAATCAGACCAGGAGGAAGTTACACTTACAGGTTTACCGTACAAGGACAGGAAGGGACTTTGTGGTGGCATGCGCATAGCTCGTGGCTTAGGGCTACTGTTTATGGAGCGTTGATTATTCGTCCTAGAGAGGGAGATTCTTACCCTTTCCCAAAACCACACAGGGAAGCAACACTTCTAATGGGCGAATGGTGGGATGCAAACCCTATCGATGTAGTTAGACAAGCCACAAGAACCGGAGCAGCTCCTAATATCTCTGATGCTTACACTTTCAATGGTCAACCAGGTGACCTATATAAGTGCTCCAGCAAAGATACGATAATCGTGCCCATTGATTCCGGCGAGACCAATTTACTAAGAGTAGTAAACTCCGCCTTAAACCAAGCTCTGTTTTTCACAGTGGCTAACCACAAACTCACGGTGGTCGGAGCCGACGCTTCCTACACAAAACCCTTCACCACCTCTGTTCTAATGCTCGGCCCTGGCCAAACGACCGACGTTTTAATCTCCGGCAACCAAGTTCCCGCTCGGTACTACATAGCCGCACGTGCTTACCAAAGTGCTCAAAATGCAGCTTTTGGCAACACCACCACCACCGCCATTCTCAACTACAAATCTGCCCCTTGCCCCGCCAAAAAAGGCTCCCCCACCACCAAACCAATCATGCCGTTTCTCCCTGCCTTCAACGACACCGCCACCGTCACCGCCTTCAGCCGAAAATTCCGCAGCCCAAGACCTGTCCCTGTCCCGACCAAAATCGACGAAAATTTGTTCTTCACTGTTGGATTAGGACTCAACAATTGCCCACGAAATTTCAAACCCAGCCAATGCCAAGGCCCCAACGGCACTCGATTCACAGCCAGTATGAACAACGTCTCATTTGTTCTTCCTTCAAATATCTCGATTCTTCAAGCCTTTCAACAGGGGATTCCCGGCGTTCTTACTTCTGATTTTCCGGCTAACCCACCGGTGAAATTTGATTATACCGGCAATGTTAGTCAATCGCTTTTTCAACCGGTGCCGGGTACTAAAGGGTATAGATTGAAATATGGATCGACTGTACAAGTTGTGTTGCAGGACACTAGTATTGTAACACCGGAAAATCACCCGATTCATCTCCATGGTTACGATTTTTACATCATCGCCGAAGGATTTGGAAATTTTGACCCCAAAAAGGATACTAAAAAATTCAACCTCGTTGACCCTCCTCTTAGAAACACCGTCGCCGTCCCTGTAAATGGTTGGGCCGTCATACGATTCGTCGCCGATAACCCAGGTGCTTGGATAATGCATTGTCACTTAGATGTGCATATCACGTGGGGACTAGCAATGGTGTTTCTTGTAGACAACGGTGTTGGACAGCTCCAGTCAATAGAAGCTCCGCCGCCGGATCTTCCCCTATGTTAA 1725 48.12 MAAPSSLYLFAILVLFASAAALSLAHPQTHRHQFVIQATPVKRLCKTHNAITVNGQFPGPTLEMRNGDTLIVTVINKAKYNVTIHWHGIRQLRTGWADGPEFVTQCPIRPGGSYTYRFTVQGQEGTLWWHAHSSWLRATVYGALIIRPREGDSYPFPKPHREATLLMGEWWDANPIDVVRQATRTGAAPNISDAYTFNGQPGDLYKCSSKDTIIVPIDSGETNLLRVVNSALNQALFFTVANHKLTVVGADASYTKPFTTSVLMLGPGQTTDVLISGNQVPARYYIAARAYQSAQNAAFGNTTTTAILNYKSAPCPAKKGSPTTKPIMPFLPAFNDTATVTAFSRKFRSPRPVPVPTKIDENLFFTVGLGLNNCPRNFKPSQCQGPNGTRFTASMNNVSFVLPSNISILQAFQQGIPGVLTSDFPANPPVKFDYTGNVSQSLFQPVPGTKGYRLKYGSTVQVVLQDTSIVTPENHPIHLHGYDFYIIAEGFGNFDPKKDTKKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGAWIMHCHLDVHITWGLAMVFLVDNGVGQLQSIEAPPPDLPLC* 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1879497 1882796 - Chy3G051800.1 Chy03g00200 222361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00200 574 CDD CuRO_1_LCC_plant 32 148 IPR034288 GO:0005507
Chy03g00200 574 SUPERFAMILY Cupredoxins 351 574 IPR008972 -
Chy03g00200 574 ProSitePatterns Multicopper oxidases signature 1. 532 552 IPR033138 -
Chy03g00200 574 CDD CuRO_2_LCC_plant 164 310 IPR034285 -
Chy03g00200 574 Gene3D - 16 148 IPR008972 -
Chy03g00200 574 ProSitePatterns Multicopper oxidases signature 2. 537 548 IPR002355 GO:0005507
Chy03g00200 574 CDD CuRO_3_LCC_plant 419 557 IPR034289 GO:0005507
Chy03g00200 574 Gene3D - 160 352 IPR008972 -
Chy03g00200 574 Gene3D - 372 574 IPR008972 -
Chy03g00200 574 Pfam Multicopper oxidase 36 150 IPR011707 GO:0005507
Chy03g00200 574 SUPERFAMILY Cupredoxins 28 175 IPR008972 -
Chy03g00200 574 Pfam Multicopper oxidase 424 556 IPR011706 GO:0005507|GO:0016491
Chy03g00200 574 SUPERFAMILY Cupredoxins 156 353 IPR008972 -
Chy03g00200 574 Pfam Multicopper oxidase 163 312 IPR001117 -
Chy03g00200 574 PANTHER LACCASE 6 574 - -
Chy03g00200 574 PANTHER MULTI-COPPER OXIDASE 6 574 IPR045087 -
Chy03g00200 574 TIGRFAM laccase: laccase 28 574 IPR017761 GO:0046274|GO:0048046|GO:0052716
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00200 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - csv:101221525 1157.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01382 Chy-Chr2:10450823 Chy03g00200 Chy-Chr3:1879497 1.04E-79 dispersed
Chy03g00200 Chy-Chr3:1879497 Chy08g00673 Chy-Chr8:14587331 0 dispersed
Chy01g00281 Chy-Chr1:1947315 Chy03g00200 Chy-Chr3:1879497 1.06E-180 transposed
Chy02g00702 Chy-Chr2:4258748 Chy03g00200 Chy-Chr3:1879497 3.46E-61 transposed
Chy12g00325 Chy-Chr12:3510011 Chy03g00200 Chy-Chr3:1879497 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g108 . Blo13g00845 . . . Bpe15g01182 Bma03g00220 . . . . . . . Sed11g2139 . . Bhi04g02285 Tan11g0298 Cmetu12g1547 . Hepe02g3301 . Lcy10g2180 . . . . . . . Cone1ag1641 Cone5ag0168 . . Lsi03g00290 Csa06g00202 . . Blo13g00845 Blo04g00208 Bda14g00225 . . . . . . Cmo04g03016 Cmo15g00161 Cma04g02890 Cma15g00146 Car04g02780 Car15g00157 . Cpe01g02501 . . . . . . . Cla11g00573 Cam11g0624 Cec11g0622 Cco11g0612 Clacu11g0744 Cmu11g0602 Cre11g1079 . . Chy03g00200 Cme03g00284
Vvi18g1316 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme03g00284 . . Bda11g00856 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g00200 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00200 Chy_Chr03 FPKM 5.836011 6.354016 20.797552 21.556793 27.508358 28.238569 31.940332 24.294044 25.789352 29.228065