Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00226 ATGATCATTTCTTTGGACTTCTGTCCTAATGAAGAATTGGGTTTTTTCTTTTTATCAGGTGGAGCTTGTGGGTATGGGAATTTGTACAGTCAAGGATATGGAACGAACACGGCGGCTCTTAGTACTGCTCTGTTCAACAATGGCCTCAGCTGTGGCTCTTGCTATGAAATCACTTGCAACAGTGATCCTAAATGGTGTCTTCCAGGAAAAATCATCGTCACCGCCACTAATTTCTGTCCACCAAACTTTGCTCTGTCCAACGACAATGGCGGCTGGTGCAACCCTCCTCTTCAACACTTCGATTTGGCTGAGCCTGCCTTTCTCCAAATCGCTCAGTACCGTGCCGGAATCGTTCCTGTTTCCTTCCAAAGAGTACCCTGTATGAAGAAGGGAGGAATAAGATTCACCATTAACGGACATTCATACTTCAACTTAGTTCTAATCACCAATGTGGGCGGCGCCGGAGACATCCATTCGGTGTCAATCAAAGGTTCGAAAACAGGGTGGCAAGCGATGTCAAGAAATTGGGGTCAGAATTGGCAGAGCAACAATTACTTGAATGGACAGAGCCTCTCTTTCCAAGTCACCACCAGCGACGGCCGTACCGTCACTAGCTACGACGCCGTTCCGGCGAACTGGCAGTTCGGTCAGACGTTCGAGGGAGGCCAATTCTAA 675 48.0 MIISLDFCPNEELGFFFLSGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEITCNSDPKWCLPGKIIVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFQRVPCMKKGGIRFTINGHSYFNLVLITNVGGAGDIHSVSIKGSKTGWQAMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTVTSYDAVPANWQFGQTFEGGQF* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2111920 2112695 - Chy3G052060.1 Chy03g00226 222387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00226 224 SUPERFAMILY PHL pollen allergen 129 221 IPR036749 -
Chy03g00226 224 PRINTS Expansin/Lol pI family signature 169 183 IPR007118 GO:0005576
Chy03g00226 224 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Chy03g00226 224 PRINTS Expansin/Lol pI family signature 19 37 IPR007118 GO:0005576
Chy03g00226 224 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Chy03g00226 224 PRINTS Expansin/Lol pI family signature 115 131 IPR007118 GO:0005576
Chy03g00226 224 SMART dpbb_1 37 122 IPR007112 -
Chy03g00226 224 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 20 132 IPR007112 -
Chy03g00226 224 PANTHER EXPANSIN 20 224 - -
Chy03g00226 224 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 142 221 IPR007117 -
Chy03g00226 224 PRINTS Expansin signature 59 70 IPR002963 GO:0009664
Chy03g00226 224 PRINTS Expansin signature 107 120 IPR002963 GO:0009664
Chy03g00226 224 PRINTS Expansin signature 207 223 IPR002963 GO:0009664
Chy03g00226 224 PRINTS Expansin signature 32 46 IPR002963 GO:0009664
Chy03g00226 224 PRINTS Expansin signature 143 164 IPR002963 GO:0009664
Chy03g00226 224 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Chy03g00226 224 PRINTS Expansin signature 71 81 IPR002963 GO:0009664
Chy03g00226 224 PRINTS Expansin signature 90 107 IPR002963 GO:0009664
Chy03g00226 224 PRINTS Expansin signature 131 143 IPR002963 GO:0009664
Chy03g00226 224 Pfam Lytic transglycolase 37 122 IPR009009 -
Chy03g00226 224 Pfam Expansin C-terminal domain 133 210 IPR007117 -
Chy03g00226 224 Gene3D - 10 128 IPR036908 -
Chy03g00226 224 Gene3D - 131 224 IPR036749 -
Chy03g00226 224 SUPERFAMILY Barwin-like endoglucanases 19 150 IPR036908 -
Chy03g00226 224 PANTHER EXPANSIN-A15 20 224 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00226 Chy-Chr3:2111920 Chy10g00315 Chy-Chr10:7887475 6.18E-137 dispersed
Chy03g00226 Chy-Chr3:2111920 Chy10g01014 Chy-Chr10:15516342 3.31E-132 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00226 - K20628 csv:101217496 419.083