Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00230 ATGAAAAGGCTACTGGGGTTGTTCGTCTTGTTTGTTGTGGTTCCAGTGTTGGCGAGATCTCTGAACCCACCTTTGAACGAAGACGTTTTGGGGCTGATTGTGTTCAAGGCCGACATTGAAGACCCTGAAGGGAAACTCGCCTCGTGGAATGAAGATGACGATAACCCATGTAATTGGGTTGGTTTAAAATGCAACCCCAGATCCAATAGAGTTGTTGAGCTTAATCTTGATGGCTTCTCACTCAATGGCAGGCTTGGTCGTGGTCTTCTTCAATTGCAGTTTCTTCGTAAACTCTCTCTTGCGAACAACAATCTTACTGGAAATTTAAGTCCCAATAATGCTCGTTTTGAAAATCTTCGAGTGGTTGATTTAAGCGGCAATGGGTTTCATGGGATGATTCCGGATGATTTCTTCCGGCAATGTGGGTCGTTGAGAGTAATCTCTTTGGCTAACAACAAAATTTCAGGGAAAATCCCGGAAAGTCTGAGCTCTTGTTCCAGTCTTGCTGCTGTAAATTTATCTTCTAATCAGTTTTCAGGTTCATTGCCTTCTGGGATTTTGTCCTTAACTGGGCTTCGATCTTTGGATTTGTCTGATAATATTTTGGAAGGTGAAATTCCACCGGAGGTGAAGGGTATGAATAATTTGCGAGCTGTTAATTTGGGGAAGAATCGGTTTTCTGGACAGATCCCAGATGGGATTGGGAGTTGTTTGCTCTTGAGGTCTGTTGATCTCAGTGAAAATTCTTTCTCCGGCAACGTTCCAGGGACAATGAAGAAGCTTAGTTTATGCAGTACTCTTAATTTAAGAAGGAACTTATTTGAAGGGGAGGTTCCTGAATGGATTGGTGGAATGGAAGGCCTTGAAATCTTGGACCTTTCAGGGAATAGGTTTTCTGGTCCTATTCCAAGTTCATTTGGGAATCTTCAAAAACTGAAGGTTTTGAATGTTTCCGGAAATGGTTTAACTGGTAGCTTGGCAGAGTCCATAGTTCCTTCTCAAAACCTTTCAGCTATGGATCTCGGTCACGGTTCTCTCACCGGTGTTCTTCCGGCCTGGATTCTGAAGCTGGGTTCGCAAAATGTATTGCCTTCTGATATCAAAAGAAGCTCTCTTTCTACAACTGTGGGAAAGGCTCTTGTTAATCTTCAAGTTTTAGATTTGTCTCACAATGCATTTTCTGGTGAAATTTCGCCTGATATTGGGATATTAAGTAGCTTGCAGGTGTTGAATCTGTGTAAGAACTCATTTGTTGGTGCTATTCCGGAGAGTATTGGAGGCCTGAAAGCCTTGGTTTTTCTTGACTTGAGTGAGAACCAGTTGAATGGAAGCATTCCCGAAACACTTGGCAGAGATGTATCTTTGAAAGAATTGAGACTGGGGAAGAACTTGCTGGAGGGTGAGGTTCCAAATTCAGTCGGGAACTGTTCTTCACTTGTAACTTTGGACGTATCGGAAAACAGATTAACCGGCTCCATACCAGCAGAATTGTCTCAACTGATCAATCTTCAAATTGTGGACTTGTCAACAAACAATCTCAGTGGTGCATTGCCAAAACAGTTGGCTAATCTTCCTAACCTTCTTTTGTTTAACATTTCTCACAACAATCTGCAAGGTGAACTACCTGCAGGTGGGTTTTTCAATACAATCTCCCCCTCCTCTGTGGCTGGAAATCCTTCTCTTTGTGGTTCTATTGTCAAGAGGTCTTGCCCAGGTGTCCTTCCAAAGCCTATTGTTCTCAACCCCAACTCATCTTCTGACGCGGGTTCTACTTCATTACCTACAACTCTTGGTCACAAAAGAATCATCCTCAGCATCTCTGCACTCATTGCCATTGGTGCAGCTGCTGTTATCCTCGTTGGTGTAGTTGCGATCACTGTCATTAACCTCCATGTTCGGTCATCTGCTAATCGTCCTGAAGCAGCCATCACGTTTTCAGGAGGGGATGACTTCAGCCACTCCCCAACTACGGATGCTAATTCTGGCAAGCTTGTCATGTTTTCAGGAGAGCCTGATTTCAGTACCGGTGCACATGCTCTCCTTAACAAGGATTGTGAGCTTGGCCGTGGCGGATTTGGAGCTGTTTACCAAACTGTTCTTCGTGATGGACATCCCGTTGCAATAAAAAAGCTCACTGTTTCAAGTCTTGTCAAATCTCAAGAAGAGTTTGAAAGGGAGGTTAAGAAGTTGGGGAAAGTTAGGCACCAAAATCTTGTGGCTTTAGAAGGTTATTACTGGACTCCATCTCTGCAGCTTCTCATATATGAATTTGTGTCTGGCGGGAGTTTGTATAAACAGCTTCATGAAGGATTGGGTGGAAACATCCTCTCATGGAATGAAAGGTTCAACATAATCCTCGGAACTGCGAAAAGCTTGGCACATTTGCACCAAATGAACATCATCAACTACAATATAAAATCAAGCAATGTACTGATTGATAGTTCGGGGGAACCTAAAGTTGGAGATTTTGGCTTAGCAAGATTGTTACCGATGCTTGATCGGTACGTGCTGAGCAGCAAGATACAAAGCGCACTAGGATACATGGCACCTGAGTTTGCCTGCAAAACGGTTAAGATAACAGAGAAATGTGATGTGTATGGATTTGGAGTTCTGGTTCTTGAAGTGGTAACAGGGAAGAGACCTGTGGAATACATGGAAGACGACGTGGTGGTACTTTGCGACATGGTTCGACGGGAGCTGGAGGAAGGTCGGGTGGAGGAATGCATTGATGGGAGGCTCCAGAGGAATTTTCCATTAGAAGAGGCCATACCAGTAGTGAAACTAGGCTTGATATGCACATCTCAGGTGCCATCGAACCGACCCGATATGGCAGAGGTTGTTAATATATTAGAGCTTATCAGATGTCCATCAGAAGGCCAAGAAGAATTGGGATGA 2895 43.77 MKRLLGLFVLFVVVPVLARSLNPPLNEDVLGLIVFKADIEDPEGKLASWNEDDDNPCNWVGLKCNPRSNRVVELNLDGFSLNGRLGRGLLQLQFLRKLSLANNNLTGNLSPNNARFENLRVVDLSGNGFHGMIPDDFFRQCGSLRVISLANNKISGKIPESLSSCSSLAAVNLSSNQFSGSLPSGILSLTGLRSLDLSDNILEGEIPPEVKGMNNLRAVNLGKNRFSGQIPDGIGSCLLLRSVDLSENSFSGNVPGTMKKLSLCSTLNLRRNLFEGEVPEWIGGMEGLEILDLSGNRFSGPIPSSFGNLQKLKVLNVSGNGLTGSLAESIVPSQNLSAMDLGHGSLTGVLPAWILKLGSQNVLPSDIKRSSLSTTVGKALVNLQVLDLSHNAFSGEISPDIGILSSLQVLNLCKNSFVGAIPESIGGLKALVFLDLSENQLNGSIPETLGRDVSLKELRLGKNLLEGEVPNSVGNCSSLVTLDVSENRLTGSIPAELSQLINLQIVDLSTNNLSGALPKQLANLPNLLLFNISHNNLQGELPAGGFFNTISPSSVAGNPSLCGSIVKRSCPGVLPKPIVLNPNSSSDAGSTSLPTTLGHKRIILSISALIAIGAAAVILVGVVAITVINLHVRSSANRPEAAITFSGGDDFSHSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHPVAIKKLTVSSLVKSQEEFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEGLGGNILSWNERFNIILGTAKSLAHLHQMNIINYNIKSSNVLIDSSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRRELEEGRVEECIDGRLQRNFPLEEAIPVVKLGLICTSQVPSNRPDMAEVVNILELIRCPSEGQEELG* 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2154205 2157270 - Chy3G052100.1 Chy03g00230 222391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00230 964 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
Chy03g00230 964 Gene3D Transferase(Phosphotransferase) domain 1 758 962 - -
Chy03g00230 964 Pfam Leucine Rich Repeat 192 212 IPR001611 GO:0005515
Chy03g00230 964 SMART LRR_typ_2 428 452 IPR003591 -
Chy03g00230 964 SMART LRR_typ_2 500 523 IPR003591 -
Chy03g00230 964 SMART LRR_typ_2 309 332 IPR003591 -
Chy03g00230 964 SMART LRR_typ_2 213 237 IPR003591 -
Chy03g00230 964 SMART LRR_typ_2 189 212 IPR003591 -
Chy03g00230 964 SMART LRR_typ_2 116 140 IPR003591 -
Chy03g00230 964 SMART LRR_typ_2 380 404 IPR003591 -
Chy03g00230 964 SMART LRR_typ_2 524 548 IPR003591 -
Chy03g00230 964 SMART LRR_typ_2 285 308 IPR003591 -
Chy03g00230 964 SUPERFAMILY L domain-like 44 357 - -
Chy03g00230 964 Gene3D Phosphorylase Kinase; domain 1 674 757 - -
Chy03g00230 964 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 2 955 - -
Chy03g00230 964 ProSiteProfiles Protein kinase domain profile. 681 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g00230 964 CDD STKc_IRAK 687 953 - -
Chy03g00230 964 SUPERFAMILY Protein kinase-like (PK-like) 684 954 IPR011009 -
Chy03g00230 964 Gene3D Ribonuclease Inhibitor 288 573 IPR032675 -
Chy03g00230 964 Pfam Leucine rich repeat 382 441 IPR001611 GO:0005515
Chy03g00230 964 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Chy03g00230 964 Pfam Leucine rich repeat 240 298 IPR001611 GO:0005515
Chy03g00230 964 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Chy03g00230 964 Gene3D Ribonuclease Inhibitor 26 182 IPR032675 -
Chy03g00230 964 Gene3D Ribonuclease Inhibitor 183 281 IPR032675 -
Chy03g00230 964 Pfam Protein kinase domain 684 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g00230 964 SUPERFAMILY RNI-like 256 549 - -
Chy03g00230 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 955 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy03g00230 Chy10g00309 CCT
Chy03g00230 Chy10g00309 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00230 Chy-Chr3:2154205 Chy10g00309 Chy-Chr10:7756346 0 dispersed
Chy12g00389 Chy-Chr12:4585830 Chy03g00230 Chy-Chr3:2154205 1.63E-57 dispersed
Chy03g00230 Chy-Chr3:2154205 Chy12g00907 Chy-Chr12:14466675 3.44E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71115 PF07714 PK_Tyr_Ser-Thr 5.90E-39 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00230 - - csv:101217024 1812.35