Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00248 ATGGATACCAAAGGTCGACTCATTGCTGGTTCTCACAACAGAAATGAGTTTGTTCTCATCAATGCCGATGAGGTTGCAAGAGTGACATCTGTGAAAGAGCTGAGTGGGCAAATTTGCCAGATCTGTGGGGATGAGATAGAAATCACCGTAGATGGAGAGCCATTTGTTGCCTGTAATGAATGCGCCTTTCCAGTTTGTAGACCTTGCTATGAGTATGAAAGAAGAGAGGGCAATCAAGCTTGTCCTCAGTGCAAAACCAGATACAAGCGTCTCAAAGGTAGTCCTCGGGTTGAAGGCGATGAAGAAGAAGATGATATCGATGATCTTGAGAATGAATTTGACATTGCAAACAAGGATCCTAACAGTGCATATGAGGCAATGCTCTATCCTCACCTAGCCGTTGGGCGTGGTTCTCATGCTAATGGTTCTGGAAATATGGCTTCCGACCTGGACTCCTCTTCTGTCCCGACTGATATACCTCTCCTCACCTATGGCCAAGAGTTATACCATCAACCATTTTCGTCATCTCTAAATTTGCTTAATATTCGATTGCTATTTGATCTGAAGGATGCTGGAATTTCCTCCGATAAGCATGCCCTAATTATTCCTCCTTTTATTAGCCGTGGGAAAAAGGTCCATCCGGTGCCGTTCACTGATTCTTCCATGTCTGCCAATCCAAGGCCAATGGATCCGAAAAAGGATTTAGCTGTGTATGGATATGGAACTGTTGCGTGGAAGGAAAGAATGGAAGACTGGCGGAAGAAGCAAAATGAAAGACTTCAAGTAATTAAGCATGAGGGTGGTGGTGGAAAAGGTGACGATGAGCTCGATGATACAGATTTGCCTATGATGGATGAAGGGAGACAACCACTCTCCAGAAAACTGCCTATCCCCTCAAGCAAGATAAACCCGTACAGAATGATAATTGTACTTCGTATTGTCATCCTTTGCCTCTTTTTCCACTATCGTATTCTTCATCCTGTCCATGAGGCATATGGGCTGTGGTTAACATCAGTAATCTGTGAGATTTGGTTTGCTGCATCATGGATATTGGATCAGTTCCCAAAATGGTGCCCCATTGTTCGAGAAACTTACCTTGATCGGTTATCGTTAAGGTACGAAAAAGATGGCAAGCCATCAGAATTGGCTTCGATAGATGTTTATGTGAGTACAGTGGATCCATTGAAGGAGCCTCCTCTCATCACAGCAAACACTGTCCTGTCTATTCTCGCTGTCGATTATCCTGTAGACAAGGTTTCGTGCTATGTTTCTGATGATGGTGCTGCCATGCTTACTTTTGAAGCCCTTTCGGAAACTTCTGAGTTTGCAAGAAAATGGGTTCCTTTCTGCAAGAAGTTCAATATTGAACCTCGGGCCCCAGAATGGTATTTTGCCCAGAAGGTGGACTATTTGAAAGACAAAGTCGATCCAACATTTGTCAGGGAACGACGTGCAATGAAGAGAGACTATGAAGAATTTAAAGTTCGTATCAATGGGCTTGTTGCTATGGCTCAAAAAGTTCCTGAAGATGGGTGGACGATGCAGGATGGAACTCCATGGCCCGGGAACAACGTTCGGGATCATCCTGGAATGATTCAGGTATTCCTCGGTCAAAACGGTGTTCGTGACTTGGAGGGAAATGAATTACCTCGTCTAGTGTATGTATCTCGTGAGAAGAGGCCAGGATTTGATCACCACAAGAAAGCCGGTGCCATGAATGCTTTGGTGCGTGTCTCGGCAATTATCTCAAATGCTCCATACATTTTGAACGTCGATTGTGATCACTACATCAACAACAGCAAGGCTCTTAGAGAAGCAATGTGCTTCATGATGGACCCAATTTCAGGAAAAAGAATATGCTATGTGCAGTTTCCACAAAGATTTGATGGGATTGATAGGCACGATCGATACTCAAATCGAAATGTTGTATTCTTTGATATCAACATGAAAGGATTGGATGGTATTCAAGGGCCAATATATGTTGGAACTGGATGTGTTTTTAGGAGGCAAGCTCTTTATGGGTATGATGCCCCTGCTAAGAAGAAAGCACCAAGAAGGACATGCAACTGTCTTCCAAAATGGTGCTGCTGTTGCTGTGGAACTAGAAAGAAGACTAAAACAAAGACCAGTGATAAAAAGAAATTAAAGACCAAAGATACGTCCAAACAGATTCACGCACTTGAAAATATTGAAGAAGGAATCGAAGGAATAGATAATGAAAAATCATCTCTGATGCCCCAAGTTAAGTTTGAGAAGAAGTTTGGGCAATCACCAGCATTCATTGCTTCCACACTCATGGAAGATGGTGGCGTGCCAGGAGGAGGGACTTCTGCTTCATTGTTGAAAGAAGCCATACACGTAATCAGTTGCGGTTATGAAGATAAATCCGAGTGGGGTAAAGAGGTTGGGTGGATTTATGGGTCTGTTACAGAGGATATTTTAACAGGTTTCAAGATGCATTGTCATGGATGGAGATCAGTTTATTGCATTCCTAAAAGGGCAGCATTCAAGGGTTCAGCTCCTATTAACTTGTCTGATCGTTTACACCAAGTTCTTCGGTGGGCTCTTGGGTCTGTTGAAATTCTGTTGAGTAGGCATTGTCCAATATGGTACGGCTATGGATGTGGTTTGAAGTGGCTTGAGCGTTTCTCATACATAAACTCCGTTGTGTATCCATTGACGTCAGTTCCACTGATTGCTTATTGTACGCTGCCAGCTGTCTGCCTGCTTACAGGGCAGTTTATTGTACCCGAGCTTAGCAACTATGCCAGTATTATTTTCATGGCACTTTTCATCTCTATAGCAGCGACGGGTATCCTAGAAATGCAGTGGGGAGGTGTAGGGATTCATGATTGGTGGAGAAACGAGCAGTTCTGGGTTATTGGTGGTGCTTCGTCTCATCTTTTTGCACTTTTCCAGGGTCTGCTAAAGGTGTTGGCTGGTGTTAACACAAATTTCACTGTCACATCCAAAGGAGGAGATGATGGGGATTTTGCCGAGCTTTACCTCTTCAAATGGACATCATTGTTGGTCCCTCCCTTGACCTTATTGATCATAAACATCATCGGAGTAGTTGTCGGAATTTCAGATGCCATCAACAATGGTTACGACTCATGGGGTCCACTCATTGGTAAGCTGTTCTTTGCATTCTGGGTGATTGTCCATCTGTATCCATTCCTTAAGGGTTTGATGGGGAAGCAAGACAAGGTACCAACTATTATCATTGTGTGGTCAATCCTTCTATCATCCATTTTGTCGCTTTTATGGGTCCGAATCAACCCCTTCCTTGACAAGGGTGGCATTGTGTTGGAAGTTTGCGGGTTAAACTGTGACGACTAA 3339 43.61 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLENEFDIANKDPNSAYEAMLYPHLAVGRGSHANGSGNMASDLDSSSVPTDIPLLTYGQELYHQPFSSSLNLLNIRLLFDLKDAGISSDKHALIIPPFISRGKKVHPVPFTDSSMSANPRPMDPKKDLAVYGYGTVAWKERMEDWRKKQNERLQVIKHEGGGGKGDDELDDTDLPMMDEGRQPLSRKLPIPSSKINPYRMIIVLRIVILCLFFHYRILHPVHEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDVYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFAQKVDYLKDKVDPTFVRERRAMKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNALVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKAPRRTCNCLPKWCCCCCGTRKKTKTKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPAFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRAAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSVPLIAYCTLPAVCLLTGQFIVPELSNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGDFAELYLFKWTSLLVPPLTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDKGGIVLEVCGLNCDD* 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2363057 2368498 - Chy3G052280.1 Chy03g00248 222409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00248 1112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Chy03g00248 1112 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 531 677 IPR029044 -
Chy03g00248 1112 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Chy03g00248 1112 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Chy03g00248 1112 PANTHER CELLULOSE SYNTHASE 1 1110 - -
Chy03g00248 1112 SUPERFAMILY RING/U-box 28 107 - -
Chy03g00248 1112 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1110 - -
Chy03g00248 1112 Pfam Cellulose synthase 385 1099 IPR005150 GO:0016020|GO:0016760|GO:0030244
Chy03g00248 1112 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Chy03g00248 1112 Coils Coil 99 119 - -
Chy03g00248 1112 SUPERFAMILY Nucleotide-diphospho-sugar transferases 399 894 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01019 Chy-Chr2:6871617 Chy03g00248 Chy-Chr3:2363057 0 dispersed
Chy03g00248 Chy-Chr3:2363057 Chy04g00357 Chy-Chr4:3161093 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00248 K10999 - csv:101214061 2113.96