Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00253 ATGGCGGCCTCCTTTTCAACTTCACCTTATCCTATCCTCACCTCTCACCGCTCCAATCGCTTGCCTGCATACCATTCTTCTTCATCCAGACTCTCTTCCTCCTCCTCTCTACACTTACCTCTTCAGCTTCGACGTTTTCCACTTGCAAATACTCGGATTTCACCTCCATCCTCCTCTCGATCCTTCCCTGTGGTCAAAGCAAAGAACCAAACGTTCTCTTCCTTTGATGATTTACTGGCCAACTCGGACAAACCTGTGCTAGTCGACTTCTATGCAACCTGGTGTGGTCCTTGTCAGTTCATGGTTCCTATTCTTGAACAAGTTAGTGCAGCACTGATTGACAAAGTCCAGGTGGTCAAGATTGACACCGAAAAATATCCTGCCATTGCTGATAAATACAGAATAGAGGCATTGCCTACATTCATCCTCTTCAAAGATGGAAAACCCCTTGACCGATTTGAAGGAGCTTTGGCTGCACGTGAGCTCATCCAACGCATTGAAGATTCTCTGAAGGTTAAGCAATAA 525 45.9 MAASFSTSPYPILTSHRSNRLPAYHSSSSRLSSSSSLHLPLQLRRFPLANTRISPPSSSRSFPVVKAKNQTFSSFDDLLANSDKPVLVDFYATWCGPCQFMVPILEQVSAALIDKVQVVKIDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ* 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2519265 2521273 - Chy3G052330.1 Chy03g00253 222414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00253 174 CDD TRX_family 73 167 - -
Chy03g00253 174 ProSiteProfiles Thioredoxin domain profile. 51 171 IPR013766 -
Chy03g00253 174 PRINTS Thioredoxin family signature 134 145 - -
Chy03g00253 174 PRINTS Thioredoxin family signature 94 103 - -
Chy03g00253 174 PRINTS Thioredoxin family signature 86 94 - -
Chy03g00253 174 PANTHER THIOREDOXIN Y1, CHLOROPLASTIC 17 173 - -
Chy03g00253 174 SUPERFAMILY Thioredoxin-like 71 171 IPR036249 -
Chy03g00253 174 PANTHER GEO12009P1 17 173 - -
Chy03g00253 174 ProSitePatterns Thioredoxin family active site. 87 105 IPR017937 -
Chy03g00253 174 TIGRFAM thioredoxin: thioredoxin 72 168 IPR005746 GO:0015035
Chy03g00253 174 Pfam Thioredoxin 70 167 IPR013766 -
Chy03g00253 174 Gene3D Glutaredoxin 55 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00253 - - - csv:101213340 309.686
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00253 Chy-Chr3:2519265 Chy03g00578 Chy-Chr3:8280834 1.03E-21 dispersed
Chy03g00253 Chy-Chr3:2519265 Chy10g00963 Chy-Chr10:15143197 3.13E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1363 . Blo12g00783 . Bda03g00395 . Bpe04g00357 Bma04g00373 . . . . Cma09g01174 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0373 . . . . . . . . . . . . . . Cmo09g01181 . . . . . . . . . . . . . . . . . . . . . . Chy03g00253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013186 1 1 1 1 1 0 2 0 0 1 1 0 2 1 1 2 0 1 1 0 0 1 1 1 1 1 1 1 2 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00253 Chy_Chr03 FPKM 0.732799 1.29973 1.073493 0.460115 3.474735 2.859322 3.44173 0.809251 0.524117 0.75426