Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00268 ATGACTGAACCATCAAAAGTTATTCACGTCCGAAACGTTGGCCATGAAATATCGGAGAACGATTTGCTTCAGCTATTCCAGCCCTTTGGTGTCATAACTAAGCTTGTCATGCTTCGTGCTAAAAATCAGGCACTTATGCAGATGCAAGATGTTCCCTCAGCAGTTAATGCTTTGCAGTTCTTTGCTAATCTTCAACCAAGCATTAGGGGGAGGAATGTTTATGTCCAGTTTTCATCACATCAAGAGCTAACTACAGCAGATCAGAATGCTCAAGGACGAGGAGATGAGCCAAATCGAATACTCTTAGTCACAATCCATCACATGCTATATCCCATTACAGTGGAAGTGCTGCATCAAGTATTTTTCCCACATGGATTTGTGGAGAAGATCGTGACATTTCAGAAGTCAGCTGGTTTTCAGGCTCTCATTCAGTATCAAACTCGGCAATGTGCTGTTTCTGCTAGGACTGCACTACAGGGACGTAATATATATGATGGTTGCTGTCAGCTAGACATTCAGTTCTCCAATCTTGACGAATTACAGGTGAACTACAATAATGAACGTTCAAGGGATTTCACCAATCCTAGCCTGCCTTCTGAACCAAAAGGCCGGTCATCTCAACCTGGTTATGGTGATACGGGAGGGATGTATACAATTCAAGCATCTGGAGCGAGACCAGTTGGATTCTCACAGATGGCCAATGCAGCCGCTGTTGCTGCTGCTTTCGGAGGAGGTTTGCCACCTGGTGTTAGTGGAACGAACGACAGGTGTACAGTTCTTGTGTCCAATCTGAATCCTGATAGAATAGATGAAGACAAGCTTTTTAACCTCTTCTCCATTTACGGTAACATTGTAAGAATTAAGCTTCTCCGGAATAAACCTGATCATGCACTTGTGCAGATGGGAGATGGGTTCCAGGCAGAATTGGCTGTACACTTTTTGAAGGGAGCAATGTTGTTTGGCAAGAGATTGGAGGTCAACTTCTCAAAGCATCCTAATATTACGCAAGGGGCTGACACTCATGAATATGCTAACTCAAACCTTAATCGTTTTAACCGAAATGCTGCAAAGAACTACCGCTACTGCTGCTCCCCCACAAAAATGATCCACATATCATCTCTATCTCAGGAAGTGACTGAAGAAGAGATAGTGAGTCTCCTTGAGGAGCATGGGCCGATTGTCAACAGCAAGCTCTTTGAGATGAATGGTAAGAAGCAGGCACTCATCATGTTTGACACTGAGGAGCAGGCGACTGAAGCTCTTGTTTGCAAGCATGCTAGTTTGCTTAGTGGGTCGATCATTCGCATTTCGTTTTCCCAGTTGCAGACTTTATGA 1335 44.04 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALMQMQDVPSAVNALQFFANLQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCAVSARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPSLPSEPKGRSSQPGYGDTGGMYTIQASGARPVGFSQMANAAAVAAAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSKLFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL* 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2747845 2756390 + Chy3G052480.1 Chy03g00268 222429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00268 444 Gene3D - 1 96 IPR012677 -
Chy03g00268 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 367 441 IPR000504 GO:0003723
Chy03g00268 444 Pfam RRM-like domain 96 175 IPR021790 -
Chy03g00268 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Chy03g00268 444 CDD RRM1_PTBPH3 6 80 IPR034795 -
Chy03g00268 444 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
Chy03g00268 444 MobiDBLite consensus disorder prediction 188 203 - -
Chy03g00268 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 331 IPR000504 GO:0003723
Chy03g00268 444 SUPERFAMILY RNA-binding domain, RBD 247 339 IPR035979 GO:0003676
Chy03g00268 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Chy03g00268 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 371 431 IPR000504 GO:0003723
Chy03g00268 444 Gene3D - 254 347 IPR012677 -
Chy03g00268 444 SMART rrm1_1 102 171 IPR000504 GO:0003723
Chy03g00268 444 SMART rrm1_1 7 76 IPR000504 GO:0003723
Chy03g00268 444 SMART rrm1_1 368 437 IPR000504 GO:0003723
Chy03g00268 444 SMART rrm1_1 258 327 IPR000504 GO:0003723
Chy03g00268 444 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 443 - -
Chy03g00268 444 Gene3D - 98 201 IPR012677 -
Chy03g00268 444 CDD RRM4_PTBPH3 360 438 - -
Chy03g00268 444 SUPERFAMILY RNA-binding domain, RBD 359 442 IPR035979 GO:0003676
Chy03g00268 444 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 4 440 IPR006536 GO:0003723|GO:0005634|GO:0006397
Chy03g00268 444 MobiDBLite consensus disorder prediction 188 212 - -
Chy03g00268 444 CDD RRM3_PTBPH3 256 331 IPR034797 -
Chy03g00268 444 SUPERFAMILY RNA-binding domain, RBD 97 198 IPR035979 GO:0003676
Chy03g00268 444 Gene3D - 348 443 IPR012677 -
Chy03g00268 444 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 443 - -
Chy03g00268 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00268 K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2 - csv:101210828 869.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00268 Chy-Chr3:2747845 Chy09g01425 Chy-Chr9:15843090 9.34E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1355 . . Bda01g00863 . . . . . . . Cma01g00928 . . . . Cpe06g00967 . Bhi04g02176 . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 . . . . . . . Cme03g00918 Blo17g00141 Blo18g00151 . Bda13g01425 Bpe02g01100 . Bma01g01436 Bma02g00160 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00243 . Chy03g00268 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004715 2 1 2 2 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00268 Chy_Chr03 FPKM 9.873157 11.563961 12.727167 11.890276 9.580002 7.324105 7.950894 10.244388 14.178422 15.870851