Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00280 ATGGGCTGTGCACAGACGAAGCATTCGGTGAATTCGCCCACTGGGGGAGTTGAGAAGCTGAAATTGGACAATGGGTATGCTGGGATTAATGGTTTTATTGCTCATCGGAGGTCGGTGGGGCAGAGGAGATTTGTTGGCAGGGAGTCATCTGAAGCAGAGAGGCCTCACGGCGGTGGGAATGACCAATTTGGTTCAGACAACAGTGAACTAGTGGATGGATGGCCCAAATGGCTTACTAGTAATATTCCTAAACATGTGTTGGCTGGCTTGGTTCCCAAGAGTGTGGAGGCCTATGACAAGCTGGATAAGGTAGGCCAAGGAAGTTATAGCAATGTGTATAAAGCTCGAGATAGGGAAACTGGAAAGATTGTTGCCCTAAAGAAGGTCCGTTTTGATACAACGGAACCTGAGAGTGTGAAGTTCATGGCAAGAGAAATTATGATATTGCTGAAACTTGATCATCCCAACATTGTCAAACTTGAAGGATTGGCTACCTCAAGAATGCAGTTCAGTCTTTATCTTGTTTTTGATTTTATGCAGACTGATTTGGCCCGAGTTATTTCCCACCCCGATGTACGGCTTACGGAGCCTCAGGTCAAAAGCTATATGCATCAGCTACTCTCTGGTTTGAAGCATTGCCATGATAAAGGGATACTACATCGTGATATCAAAGGATCAAACCTGTTAATAGATAAAAATGGGATGCTGAAGATTGCCGATTTTGGGCTTGCCATTTTTTTCAGTCCAAAGAGGCATCTTACAAATCGTGTTGTGACTCTATGGTATCGAGCTCCGGAGCTATTGTTAGGTGCTACAGAATATGGAGTTGGCATTGATCTATGGAGTGCTGGATGTCTCTTTGCAGAAATGTTCACAGGAAGGCCAATTCTGCCAGGTCGAACAGAGGTTGAACAACTTCACAAAATTTTCAAGTTATGTGGTACACCATCTGAGGAGTATTGGAGAAAACTCAAGCTGCCACCTACTTTCAGACCTCCACAGTCGTATCGACCTAGTCTCAGAGAATCTTTTAAGCATTTTCCCTCATCTTCTCTAGGCCTACTCAACACTCTACTCGCTTTGGAGCCTTCATATCGTGGCTCTGCATCTTCGGCCCTTGACAATGAATTCTTTTACACAAGCCCACTGGCATGCAGCCTTTCGGATCTTCCTATAATCCACAGTGAGCCCGATGTACCGGATAAAGCAAATCAGCAGAAGTCTAGGAATGCTAAAGTTACAAGGCGTTTGCATACGCACCGTGAACGCCGGAGGAAAGATTTAACTGCCGGAATACCGAAAGAAGAATCAAATCTTCCCAAACAGCTTTCACAGCAAAGGGGGGATGACGACGAACAAAATGAAGAGCGAGGGAGTACTACAACGAGCACCTCCTCAAGTGTTAACAATGGAGTGCTGAAGGGGAGTACAATGTCGAGCACTTCTTCAAGTGTTAACACGGGAGGTCGAAAGACAACGAGCACCTCATCAAGTGTGAACACGGGAGGGGGAACAGGGAGCTCTAACTTCTTGCTATCTCCAATTTCATACTCTAACAGGAAGTCATCAAGAATCCAAGGCCATCTTCAGGTAACTAATAACCTCAACTTGCCTCCGTTGCCTAAGACAAGAGAATACTCAACCTTCAACATCAAAGACCATGGTGCACATATCACGGGTCAGGTTCGGAGGTCGGTCTCGACTAGAGATTTCAGGAATTTGGAGCGAAAAGAGCATTTAAAATTGTATGCCGTTGATGATTAG 1764 45.24 MGCAQTKHSVNSPTGGVEKLKLDNGYAGINGFIAHRRSVGQRRFVGRESSEAERPHGGGNDQFGSDNSELVDGWPKWLTSNIPKHVLAGLVPKSVEAYDKLDKVGQGSYSNVYKARDRETGKIVALKKVRFDTTEPESVKFMAREIMILLKLDHPNIVKLEGLATSRMQFSLYLVFDFMQTDLARVISHPDVRLTEPQVKSYMHQLLSGLKHCHDKGILHRDIKGSNLLIDKNGMLKIADFGLAIFFSPKRHLTNRVVTLWYRAPELLLGATEYGVGIDLWSAGCLFAEMFTGRPILPGRTEVEQLHKIFKLCGTPSEEYWRKLKLPPTFRPPQSYRPSLRESFKHFPSSSLGLLNTLLALEPSYRGSASSALDNEFFYTSPLACSLSDLPIIHSEPDVPDKANQQKSRNAKVTRRLHTHRERRRKDLTAGIPKEESNLPKQLSQQRGDDDEQNEERGSTTTSTSSSVNNGVLKGSTMSSTSSSVNTGGRKTTSTSSSVNTGGGTGSSNFLLSPISYSNRKSSRIQGHLQVTNNLNLPPLPKTREYSTFNIKDHGAHITGQVRRSVSTRDFRNLERKEHLKLYAVDD* 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2978617 2982637 - Chy3G052600.1 Chy03g00280 222441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00280 587 MobiDBLite consensus disorder prediction 43 66 - -
Chy03g00280 587 ProSiteProfiles Protein kinase domain profile. 98 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g00280 587 SUPERFAMILY Protein kinase-like (PK-like) 93 382 IPR011009 -
Chy03g00280 587 PANTHER CELL DIVISION PROTEIN KINASE 54 499 - -
Chy03g00280 587 Gene3D Phosphorylase Kinase; domain 1 88 180 - -
Chy03g00280 587 MobiDBLite consensus disorder prediction 458 510 - -
Chy03g00280 587 MobiDBLite consensus disorder prediction 396 510 - -
Chy03g00280 587 Gene3D Transferase(Phosphotransferase) domain 1 181 419 - -
Chy03g00280 587 Pfam Protein kinase domain 98 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g00280 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Chy03g00280 587 CDD STKc_CDK9_like 98 378 - -
Chy03g00280 587 PANTHER CYCLIN-DEPENDENT KINASE 54 499 - -
Chy03g00280 587 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Chy03g00280 587 MobiDBLite consensus disorder prediction 409 423 - -
Chy03g00280 587 SMART serkin_6 98 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00280 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - csv:101209601 1118.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01006 Chy-Chr2:6771512 Chy03g00280 Chy-Chr3:2978617 5.63E-174 dispersed
Chy03g00280 Chy-Chr3:2978617 Chy09g00032 Chy-Chr9:301478 1.69E-155 dispersed
Chy03g00280 Chy-Chr3:2978617 Chy12g01147 Chy-Chr12:16403329 2.24E-150 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1343 Blo01g01738 . . . . . . Bma01g02517 . . . Cma09g01247 Car01g00780 . . . . Bhi04g02165 . . . . . . Cla08g00325 Cam08g0756 Cec08g0290 . Clacu08g0468 . . Cone4ag1474 . . . . . . Cme03g00895 . . Bda11g00865 . . . . . . . Cmo09g01213 . . . Car09g01082 . . . . . . . . . . . . . . . . Lsi08g00253 . Chy03g00280 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002491 3 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 1 0 1 2 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71117 PF00069 Pkinase 6.00E-69 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00280 Chy_Chr03 FPKM 24.17383 25.138748 6.703939 7.111405 10.740566 10.197788 11.940463 3.846142 3.444885 4.015566