Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00282 ATGTCGATGCTTAATTCCTTCTTCAACAAGGGCTTCAAGGCTGCACAATGTAAAACACTGCTTAAATTGACAATTCCCCGAATAAAGCTGTTGAGGAATCGAAGAGAGATCCAGCTTAAGCAGATGCGCCGAGACATAGCTAAGCTTCTCGAAACAGGACAAGAAGCTACTGCTCGCATTCGGGTTGAACATATAATCAGAGAAGAGAATATGATGGCCGCTCAGGAAATTCTTGAATTATTCTGTGAGCTTATTGTTGTTCGCCTTCCAATTATTGAAACACAAAGGGAATGTCCTCTAGACTTGAAAGAAGCGATCTCAAGTGTGTGTTTTGCTGCTCCAAGGTGTGCTGATCTTACAGAGCTTATCCAGGTTCAGATGCTTTTTGGTGCTAAATATGGGAAGGAATTTGTATCAGCTGCAACTGAGCTCATGCCTAACTGTGGTGTTAATCGTCAGTTGATAGAGCTGCTTTCTGTTCGTGCTCCTTCACCTGAAAAGAAACTGAAGCTGTTGAAGGAAATTGCTGAAGAGCATGACTTGGATTGGAATCCTGCTGAAACTGAAGCTGAGTTTAACAAATCTCCAGAAGATTTGCTTAATGGATCGACACAGTTTGTCGGCGCATCAAAATTACCTCTTCCTCAAGAGAAACACAATGAAACATCCAATACCACTACCGATTTGGCTAGTGGACCCCAACCTGACTCTGATTCTGAATTGGACATGTTAGACTTTCCTGAAGTTCCAAAAATGTCAGTATGTCCGCAGCCTACTATAGATGCTGGCTCTGCACCATCAATGATCCCACCTCCATCTGTGTTGCCACCGCCTGAAACTGATCATGCTTCTTTTGAGTATTCTGGTATTCCTGAATCACCGACACAAAATCTACACTCGAGACATGAGGAGGTGACTCTGGTGAGATCTGTTTCACCCAGCAACGATCAAATGAATGTTTCTGTTGGTGAAGATAAACAGTTTTTGCCTTTTATTACTCCCCCATCATTGTCATCTTCGTTCTCTCGTAGACAAACTGAGTTGTCGCCATCCTCTGATCCAACAACGCCTGAGGAGAAGTTTGATATCAAACCTCGGATCAGAGAAGAGATAAATTCACCACTACCCTCTGTTTCAAGGGCTTCTGAGGAGAAGTTGGGTTTCAAACCACGGTTCGAACCAGAGATAAATTCAACACCATCCTCTGTTTCGAGGACAATGAGTGAGGTCAATGCAGATCTTGGTGTTGATTTGCAAGATGTTCTGGCAGCTGCTCAGGCTGCTGCTGAAACCGCTGAACGTGCTGCCGCTGCAGCTCGTTCTGCTGCTAGTCTCGCCAAGGTTAGAATTGACGAGCTCACAAAGAAAAAGAATGATAAGGACCCTGAAATTAGTTGCGAAAATCCATTTCACGGAGGTACTGCAAGTCCGGCAGATCATACAGAAACATACAAACTGAACCAAGATTCTCTGGGACACCATTCTAGTGCAATGCCATATTATTCACAAGATTTTTTTCAAGAACATCACAAATTAAGCCGCGATCCAGAAGTTTCTGATCACAGCCAACTCAAGCCAGAAAAATCAAGTTTCGATTACTCTCCTGGTAATTCACCATCTGAACATCAGACAGTAGCCCCTCATCAGCCACAGAGGCTCCCTTCAATGGACGACGACCCATACTTTTCATACCCAAATTTATTCACATCACAGAAACCAAATCCAGGATTCGATCATTCATCAGCTGGTGATTCCTGA 1758 43.63 MSMLNSFFNKGFKAAQCKTLLKLTIPRIKLLRNRREIQLKQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELFCELIVVRLPIIETQRECPLDLKEAISSVCFAAPRCADLTELIQVQMLFGAKYGKEFVSAATELMPNCGVNRQLIELLSVRAPSPEKKLKLLKEIAEEHDLDWNPAETEAEFNKSPEDLLNGSTQFVGASKLPLPQEKHNETSNTTTDLASGPQPDSDSELDMLDFPEVPKMSVCPQPTIDAGSAPSMIPPPSVLPPPETDHASFEYSGIPESPTQNLHSRHEEVTLVRSVSPSNDQMNVSVGEDKQFLPFITPPSLSSSFSRRQTELSPSSDPTTPEEKFDIKPRIREEINSPLPSVSRASEEKLGFKPRFEPEINSTPSSVSRTMSEVNADLGVDLQDVLAAAQAAAETAERAAAAARSAASLAKVRIDELTKKKNDKDPEISCENPFHGGTASPADHTETYKLNQDSLGHHSSAMPYYSQDFFQEHHKLSRDPEVSDHSQLKPEKSSFDYSPGNSPSEHQTVAPHQPQRLPSMDDDPYFSYPNLFTSQKPNPGFDHSSAGDS* 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3009198 3013587 + Chy3G052620.1 Chy03g00282 222443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00282 585 MobiDBLite consensus disorder prediction 480 502 - -
Chy03g00282 585 MobiDBLite consensus disorder prediction 452 585 - -
Chy03g00282 585 MobiDBLite consensus disorder prediction 528 550 - -
Chy03g00282 585 Coils Coil 32 59 - -
Chy03g00282 585 Coils Coil 422 442 - -
Chy03g00282 585 MobiDBLite consensus disorder prediction 564 585 - -
Chy03g00282 585 MobiDBLite consensus disorder prediction 333 405 - -
Chy03g00282 585 MobiDBLite consensus disorder prediction 333 356 - -
Chy03g00282 585 MobiDBLite consensus disorder prediction 507 527 - -
Chy03g00282 585 MobiDBLite consensus disorder prediction 214 234 - -
Chy03g00282 585 Pfam Regulator of Vps4 activity in the MVB pathway 18 181 IPR005061 GO:0015031
Chy03g00282 585 MobiDBLite consensus disorder prediction 214 239 - -
Chy03g00282 585 Gene3D - 5 193 IPR042277 -
Chy03g00282 585 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 1 574 - -
Chy03g00282 585 MobiDBLite consensus disorder prediction 452 466 - -
Chy03g00282 585 PANTHER IST1 FAMILY MEMBER 1 574 IPR005061 GO:0015031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00282 - - - csv:101208940 1097.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00523 Chy-Chr2:3166011 Chy03g00282 Chy-Chr3:3009198 1.40E-83 dispersed
Chy02g01190 Chy-Chr2:8539682 Chy03g00282 Chy-Chr3:3009198 3.36E-75 dispersed
Chy02g01918 Chy-Chr2:22422560 Chy03g00282 Chy-Chr3:3009198 4.92E-28 dispersed
Chy03g00282 Chy-Chr3:3009198 Chy09g00604 Chy-Chr9:7269635 1.16E-80 dispersed
Chy03g00282 Chy-Chr3:3009198 Chy10g01134 Chy-Chr10:16299403 2.35E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1309 Blo01g01750 Blo12g00768 . Bda03g00412 Bpe02g00192 Bpe04g00378 Bma04g00389 Bma01g02532 . . . . Car01g00848 . . Cpe06g00956 . . . . . . . . Cla08g00312 Cam08g0750 Cec08g0303 . Clacu08g0461 . . . . . Cone20ag0683 . . . . . . Bda11g00852 . . . . . . . Cmo09g01216 . . . Car09g01087 . . . . . . . . . . . . . . . . Lsi08g00258 . Chy03g00282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006306 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00282 Chy_Chr03 FPKM 34.891006 38.437687 6.988829 6.133654 10.821607 12.07272 11.515609 12.247463 11.463752 10.343378