Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00317 ATGAACCTCGCTACTCTTGTTTTCTGGATCATCCAGATATCCATCCATGGAGTTGGAGTTTTCTCTAAAACGAAAGCACCAGACGTTTCTGCATTGAATGTGATGTTTAGTAGTTTAAATTCACCTTCACAACTCTCTGGTTGGGGGTCAAGTGGGGGTGATCCATGTGGAGATTCTTGGGAAGGGATTCAATGCTCAGGATCATCCGTCACTGAAATAAGTTTATCAGATTTTGGACTAAGTGGATCAATGGGTTACCAGCTTTCAAATTTGGCATCTGTCACCTACTTTGATTTGAGCAAGAACAACCTCAATGGTGATATCCCCTACCAACTTCCCCCTAATGCAGTTCACATCGATCTTTCTGGGAACAGTTTCACTGGTAGTGTGCCTTATTCAATATCACAGATGAGTGAACTTGAATTTCTAAATCTTGGTCATAACAAGCTTAGCAATCAACTGAGTGAAATGTTTGGCAAGCTGGCTAAACTCAAAAGACTGGATCTGTCCTACAACTCAATTTCAGGAAACTTACCTCAAAGTTTTAAGAAGCTTTCAAGCCTTACCGTATTGCATATACAAGATAATAAATTTTCAGGTTCAATCAATGTTCTTGCTGACCTTCCACTTGATGATTTGAATGTTGCAAATAACAAATTCACTGGATGGATTCCTGACAGTCTTGAAGATATAGATAACTTGGAAACTGTAGGAAATTCTTGGTCAACTGGACCAGCACCCCCTCCACCACCAGGGACGGTATCTCCAACGAACAAGAAATCAAACAAGGAGGAGTCAAACAAGATCAATTCGGCAGTGAAAAGTGGGTTAGTGATAGCAGGAATAGCAATGGGAGTATTAGCAATAATAGCAATAGTGATTGGAATGGCATCAAAAAGGAGGAGGCATGTATCTCATTATCTTGATGAAGACACAAGTCAACACAGATCATTCACTCCACTCACTTCCCAAGAACTCCCAAAGGGTAATGATAATAATGGGATTGATAGAAAATCCTTCAATTCAGATGCGTCTGTTGACATAAAAGGTGGTGTGGTTAGACCACCACCAGCTCCTTTAGATTCTATTCGGTCCTTCAGTGATAATCAGTTTGCAAGCCGTCTGAATTCGAGGAGGAGAAGCAATTCGTTTCGTGCAATTTCTTATTCATTGGTCGATTTGCAAACTGCCACTGCTAATTTTTCTCCTTCTCGACTTCTTGGTGAGGGTACTATTGGACGTGTTTATAAGGCCAAGTATGGAGATGGAAAGGTATTGGCAGTGAAGAAGATAGATTCATCAGTTTTTCAAGGGAGGAGAACAGAGGAGTTCAGTGAAGTAGTAGCAATAATTTCAAAGCTTAATCACACAAACATAGCAGAAGTGGTTGGATTTTGTTCAGAGCAGGGACATCATTTGTTCATTTATGAATTTTTCACGAATGGTTCACTTCATGAGTTTCTTCATATGTCTGATGACTTCAGTAAACCACTCACTTGGAACACCAGAGTCAGAATTGCTTTGGGGACAGCAAGAGCTCTTGAGTATCTTCACGAAGTTTGCTCGCCATCCATAATTCACATGAATATCAAGTCCTCTAATATATTGCTTGATGCCGAACTTAATCCTCGTCTCTCGGACTACGGTTTGGCAACATTTTATAAGAGTAGAAGCCAAAACCCTGGAGGTGGATATGATGCTCCAGAATGCAGTACAAAGGGTTCAAGTTATACTATGAAAAGTGACATTCACAGTTTGGGAGTGGTGATGTTGGAATTGTTGACGGGCCGGATGCCTTTTGACTCGAGTAAGGCAAAAGTGGAACAATGTCTAGTGAGATGGGCAACGCCACAACTGCATGACATAGATGCGTTGGACAAAATGGTGGATCCTGCATTGAGAGGCTTATATCCACCAAAGTCGGTGTCTAGATTTGCAGATATAATTGCCCTTTGCGTTCAATCAGAGCCTGAATTTAGGCCTCCAATGTCCGAAGTGGTTCAAGCCTTGGTCACTTTGGTTCAACGTTCCAGTATGAATATGAGAGATGATCTTGGAAACTCTCGACGAATGGATGATTATGACTATTAA 2091 41.08 MNLATLVFWIIQISIHGVGVFSKTKAPDVSALNVMFSSLNSPSQLSGWGSSGGDPCGDSWEGIQCSGSSVTEISLSDFGLSGSMGYQLSNLASVTYFDLSKNNLNGDIPYQLPPNAVHIDLSGNSFTGSVPYSISQMSELEFLNLGHNKLSNQLSEMFGKLAKLKRLDLSYNSISGNLPQSFKKLSSLTVLHIQDNKFSGSINVLADLPLDDLNVANNKFTGWIPDSLEDIDNLETVGNSWSTGPAPPPPPGTVSPTNKKSNKEESNKINSAVKSGLVIAGIAMGVLAIIAIVIGMASKRRRHVSHYLDEDTSQHRSFTPLTSQELPKGNDNNGIDRKSFNSDASVDIKGGVVRPPPAPLDSIRSFSDNQFASRLNSRRRSNSFRAISYSLVDLQTATANFSPSRLLGEGTIGRVYKAKYGDGKVLAVKKIDSSVFQGRRTEEFSEVVAIISKLNHTNIAEVVGFCSEQGHHLFIYEFFTNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDAELNPRLSDYGLATFYKSRSQNPGGGYDAPECSTKGSSYTMKSDIHSLGVVMLELLTGRMPFDSSKAKVEQCLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDLGNSRRMDDYDY* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3599734 3604315 - Chy3G052970.1 Chy03g00317 222478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00317 696 MobiDBLite consensus disorder prediction 235 267 - -
Chy03g00317 696 ProSiteProfiles Protein kinase domain profile. 401 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g00317 696 MobiDBLite consensus disorder prediction 315 352 - -
Chy03g00317 696 Pfam Protein kinase domain 404 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g00317 696 Pfam Leucine rich repeat 156 198 IPR001611 GO:0005515
Chy03g00317 696 Gene3D Ribonuclease Inhibitor 25 277 IPR032675 -
Chy03g00317 696 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Chy03g00317 696 SUPERFAMILY L domain-like 27 236 - -
Chy03g00317 696 Gene3D Transferase(Phosphotransferase) domain 1 479 693 - -
Chy03g00317 696 SUPERFAMILY Protein kinase-like (PK-like) 384 670 IPR011009 -
Chy03g00317 696 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 19 692 - -
Chy03g00317 696 PANTHER OS01G0253100 PROTEIN 19 692 IPR045271 GO:0004714|GO:0006468
Chy03g00317 696 Gene3D Phosphorylase Kinase; domain 1 365 478 - -
Chy03g00317 696 MobiDBLite consensus disorder prediction 315 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00317 - - - csv:101209107 1328.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00369 Chy-Chr1:2634308 Chy03g00317 Chy-Chr3:3599734 1.37E-155 dispersed
Chy01g02121 Chy-Chr1:25887747 Chy03g00317 Chy-Chr3:3599734 0 dispersed
Chy03g00317 Chy-Chr3:3599734 Chy12g00528 Chy-Chr12:7317261 0 dispersed
Chy03g00317 Chy-Chr3:3599734 Chy04g00715 Chy-Chr4:8714168 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g00369 . 31 788 Strubbelig Receptor Gene Family AT4G03390 62.9 2.2e-210 729.2
Chy02g00324 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.2 8.2e-157 551.2
Chy04g01764 . 9 741 Strubbelig Receptor Gene Family AT5G06820 53.1 1.2e-181 633.6
Chy03g00317 . 22 697 Strubbelig Receptor Gene Family AT1G78980 61.5 1.4e-195 679.9
Chy04g00715 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Chy01g02121 . 24 692 Strubbelig Receptor Gene Family AT1G78980 50.5 9.8e-125 444.5
Chy03g00317 . 20 674 Strubbelig Receptor Gene Family AT3G13065 52.2 4.1e-144 508.8
Chy12g00528 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 1.3e-84 311.2
Chy04g01764 . 9 741 Strubbelig Receptor Gene Family AT5G06820 53.1 1.2e-181 633.6
Chy01g00369 . 31 788 Strubbelig Receptor Gene Family AT4G03390 62.9 2.2e-210 729.2
Chy02g00324 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.2 8.2e-157 551.2
Chy03g00317 . 20 674 Strubbelig Receptor Gene Family AT3G13065 52.2 4.1e-144 508.8
Chy03g00317 . 22 697 Strubbelig Receptor Gene Family AT1G78980 61.5 1.4e-195 679.9
Chy04g00715 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Chy01g02121 . 24 692 Strubbelig Receptor Gene Family AT1G78980 50.5 9.8e-125 444.5
Chy04g00715 . 1 719 Strubbelig Receptor Gene Family AT1G53730 59.8 8.0e-215 743.8
Chy01g02121 . 8 714 Strubbelig Receptor Gene Family AT1G53730 60.1 3.3e-184 642.1
Chy12g00528 . 5 689 Strubbelig Receptor Gene Family AT1G53730 51.6 1.4e-158 557.0
Chy03g00317 . 15 682 Strubbelig Receptor Gene Family AT1G53730 51.8 1.2e-157 553.9
Chy04g00715 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.4 7.2e-189 657.5
Chy01g02121 . 6 704 Strubbelig Receptor Gene Family AT3G14350 55.1 4.9e-169 591.7
Chy12g00528 . 138 712 Strubbelig Receptor Gene Family AT4G22130 60.3 1.1e-179 626.7
Chy04g00715 . 398 726 Strubbelig Receptor Gene Family AT4G22130 63.4 5.3e-121 431.8
Chy01g02121 . 391 706 Strubbelig Receptor Gene Family AT4G22130 64.2 5.1e-116 415.2
Chy01g00369 . 456 780 Strubbelig Receptor Gene Family AT4G22130 57.7 4.3e-107 385.6
Chy03g00317 . 386 696 Strubbelig Receptor Gene Family AT4G22130 56.9 2.2e-98 356.7
Chy02g00324 . 464 752 Strubbelig Receptor Gene Family AT4G22130 60.1 2.8e-98 356.3
Chy04g01764 . 393 715 Strubbelig Receptor Gene Family AT4G22130 50.5 2.9e-87 319.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010758 0 1 1 1 0 1 2 0 0 1 1 1 2 1 0 2 1 1 2 1 1 0 1 0 0 1 1 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71119 PF00069 Pkinase 5.00E-41 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00317 Chy_Chr03 FPKM 10.440443 13.609207 9.53867 9.9447 1.670051 1.374458 1.395742 1.117378 0.798024 1.123781