Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00380 ATGGGTTCATGCCTCTCTGGGGACCGCAACAAGCGTACGATCCCTTACTCTGAGATTGCTTCTACTTCTCGTGATGATGGCGTTATTACGCGAAGGAACTCCAAGAGGAAGATTACGAGAAAGGGTTCTTCTCCATCCAATGATTCTTCAAGGGAGATGTCGCTTCATCGAATTCCTGGCCGGATGTTTTTAAATGGAACAACTGATCATGCTTCGCTCTTTACTAGGCAAGGCAAGAAAGGCATCAATCAGGACGCTATGATTGTTTGGGAGAACTTTGGCTCAAAAGAAGACACAATATTTTGTGGAGTCTTTGATGGACACGGTCCCTTTGGCCATATGGTTGCAAAAAAAGTTAGAGATTCTCTTCCTTTAAAACTGAATGCTCAGTTGGAGTTGGATGCTACCAGAAAGGAAGGGCCAGCCAGATGTCAAGTCTCTCCACCAACGCTGGTTAAAAAGGACTCTGGAACCTCTCATTGTGATCCTGATCATTGGGGCAGTTACGACAACATTTATATCATGCTGAAAGAGTCTTTTCTAAAGGCTTTTAAGGTGATGGACAAGGAACTTAAACTACATCCATATATCGATTGCTATACCAGTGGTACAACATCAGTTGCTTTGGTGAAACAGGGTAGGCATCTTATTATTGGAAATGTTGGGGACTCGAGAGCTGTTTTAGGGACCAGAGATAAATCTAATTCTCTCGCTGCAGTTCAATTGACTGTGGACCTCAAGCCAAATCATCCTAGGGAAGCTGAAAGGATCAGACTTTGCAAAGGAAGAATCTTTGCACTTCAAAATGAGCCTGAGATTTTTCGGGTTTGGCTTCCTAACAACGATTCTCCTGGGCTTGCTATGGCCAGAGCCTTCGGAGATTTCTGTTTGAAAGATTTTGGCGTGATAGCAGTTCCTGATGTTTCTTTTCGTCATCTTACTGAGAAAGATGAGTTTGTGGTACTTGCTACTGATGGGGTTTGGGATGTTCTTTCAAACGAAGAGGTTGTAGCAATTGTTGCATCGTCACCGAAATACTCTGCAGCTCGTGTCCTTGTGGATTCAGCTACTCGAGCATGGAGATTGAAGTACCCCACTGCCAAGGTGGATGATTGTGCTGTAGTTTGCCTGTACCTGGACTCTAACGAGAGTTCTGCAATGACAGCTAAGGAGCAGGAGTTCGCCAATGACATGGAAACATAG 1203 44.31 MGSCLSGDRNKRTIPYSEIASTSRDDGVITRRNSKRKITRKGSSPSNDSSREMSLHRIPGRMFLNGTTDHASLFTRQGKKGINQDAMIVWENFGSKEDTIFCGVFDGHGPFGHMVAKKVRDSLPLKLNAQLELDATRKEGPARCQVSPPTLVKKDSGTSHCDPDHWGSYDNIYIMLKESFLKAFKVMDKELKLHPYIDCYTSGTTSVALVKQGRHLIIGNVGDSRAVLGTRDKSNSLAAVQLTVDLKPNHPREAERIRLCKGRIFALQNEPEIFRVWLPNNDSPGLAMARAFGDFCLKDFGVIAVPDVSFRHLTEKDEFVVLATDGVWDVLSNEEVVAIVASSPKYSAARVLVDSATRAWRLKYPTAKVDDCAVVCLYLDSNESSAMTAKEQEFANDMET* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5269049 5272724 - Chy3G053600.1 Chy03g00380 222541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00380 400 MobiDBLite consensus disorder prediction 15 54 - -
Chy03g00380 400 ProSiteProfiles PPM-type phosphatase domain profile. 70 379 IPR001932 -
Chy03g00380 400 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 388 - -
Chy03g00380 400 PANTHER ALPHABET, ISOFORM E-RELATED 1 388 - -
Chy03g00380 400 Gene3D - 65 381 IPR036457 -
Chy03g00380 400 SMART PP2C_4 59 377 IPR001932 -
Chy03g00380 400 CDD PP2Cc 70 379 IPR001932 -
Chy03g00380 400 Pfam Protein phosphatase 2C 84 356 IPR001932 -
Chy03g00380 400 SUPERFAMILY PP2C-like 69 380 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00360 Chy-Chr1:2603736 Chy03g00380 Chy-Chr3:5269049 1.40E-141 dispersed
Chy03g00380 Chy-Chr3:5269049 Chy05g00688 Chy-Chr5:8866348 4.75E-153 dispersed
Chy06g00632 Chy-Chr6:4288360 Chy03g00380 Chy-Chr3:5269049 5.06E-25 dispersed
Chy03g00380 Chy-Chr3:5269049 Chy05g01064 Chy-Chr5:15162792 1.65E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00380 - - csv:101222320 787.334