Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00386 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGATGATGATTGCGATTTCTACAGCGGTGAGATGGACATGGGTGGTACTCCATTTATGATGCAAAATGGGAGTGAAGTTTCTCTTCCTCCTTACATGTATAGATTTTGTTTATGTTGTTGCTTCTGCTTAGAGGTGTCACGAAACTTTGTCAGAATTCAAAATTATACAATACTAAATGAGTCGGACATAAGACAACGCCAAGAGGATGACATTACGAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAATGTTACTAAAGTTCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGGATCTGTTTTGAATCCTATCCAAATAGTAGGATCGAGTCATCTGCCTGTGGTCATCCTTTCTGTGTATTCTGCTGGGAAGGCTACGTGAGCACATCAATTAATGACGGTCCTGGATGTCTGACGTTGAGATGTCCTGATCCTTCTTGTGGCGCTGTGGTTGATCAAGACATGATTAATTCATTGGCCTCCAGTGAAGACAGGAAAAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGATAACAAAAAGACCAAATGGTGCCCAGCGCCTGGTTGTGAGAATGCTGTTCTTTTTGACGCTTGCAATGGAAATTATGATGTTTCTTGCTTCTGCACATATAGCTTCTGCTGGAAAGTTGGTATCACTAATCATAAAGTTGTTTTAGCTTTTATTATTTTACATATGCATTTAGCTTTTCTTTTGAATCTTCAGTGCACAGAAGAAGCCCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAGAACATGAATTGGATATTAGCTAATTCGAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAACCAAGGTTGCATGCACATGACTTGCACTCCTCCGTGCAAATTTGAATTTTGCTGGCTATGTCATGGTGCATGGTCTGATCATGGTGAAAGAACTGGGGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAGATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGCGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGCTACAGATAATTGAATGTAGACGTGTTTTAAAATGGACTTATGCATATGGTTTTTACCTGCCGGAACTGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGGCTCCATCAGTGTGCGGAAAAAGAGCTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTTGCTGGTCTGACCAGTGTTACTCGAAATTATTTTGAGAACCTTGTTAGAGCATTAGAAAATGGGCTTTCAGATGTGAACTCTCATGGAGCAAGCAGCGGCACAACAAGCTCAAAAAGCACAGCAGGAAGTAGTAAAGGAGGGAGAAATGGACGTGGTAAGGGAGTGAGTCGAACTGCTAGCTCAACCAGAAGTGGCGATAATGCCACTCACTGGTCATGTGAACACTGTACCTTTGTGAACACTAGATCTGCTACTACATGTGAGATGTGCCATCAACGCCATTGA 1878 42.28 MDSEDDLHYSTDVESVDDDCDFYSGEMDMGGTPFMMQNGSEVSLPPYMYRFCLCCCFCLEVSRNFVRIQNYTILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWNVTKVHDEWFADEARVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIESSACGHPFCVFCWEGYVSTSINDGPGCLTLRCPDPSCGAVVDQDMINSLASSEDRKKYARYLLRSYVEDNKKTKWCPAPGCENAVLFDACNGNYDVSCFCTYSFCWKVGITNHKVVLAFIILHMHLAFLLNLQCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCHGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPELEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKGGRNGRGKGVSRTASSTRSGDNATHWSCEHCTFVNTRSATTCEMCHQRH* 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5373605 5380846 + Chy3G053660.1 Chy03g00386 222547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00386 625 MobiDBLite consensus disorder prediction 557 599 - -
Chy03g00386 625 Coils Coil 391 411 - -
Chy03g00386 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 231 IPR013083 -
Chy03g00386 625 ProSiteProfiles Zinc finger RING-type profile. 148 194 IPR001841 -
Chy03g00386 625 ProSiteProfiles Zinc finger RanBP2 type profile. 594 625 IPR001876 -
Chy03g00386 625 Pfam IBR domain, a half RING-finger domain 217 274 IPR002867 -
Chy03g00386 625 Pfam IBR domain, a half RING-finger domain 322 370 IPR002867 -
Chy03g00386 625 ProSiteProfiles TRIAD supradomain profile. 144 383 IPR044066 -
Chy03g00386 625 ProSitePatterns Zinc finger RanBP2-type signature. 602 621 IPR001876 -
Chy03g00386 625 SUPERFAMILY Ran binding protein zinc finger-like 598 623 IPR036443 -
Chy03g00386 625 MobiDBLite consensus disorder prediction 585 599 - -
Chy03g00386 625 SUPERFAMILY RING/U-box 145 226 - -
Chy03g00386 625 Pfam Ariadne domain 392 553 IPR045840 -
Chy03g00386 625 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 293 572 IPR031127 GO:0004842|GO:0016567
Chy03g00386 625 SMART ibrneu5 217 276 IPR002867 -
Chy03g00386 625 SMART ibrneu5 309 379 IPR002867 -
Chy03g00386 625 Gene3D - 301 556 - -
Chy03g00386 625 SUPERFAMILY RING/U-box 218 273 - -
Chy03g00386 625 SMART zf_4 600 624 IPR001876 -
Chy03g00386 625 CDD RING-HC_RBR_TRIAD1_like 148 198 - -
Chy03g00386 625 SUPERFAMILY RING/U-box 324 372 - -
Chy03g00386 625 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 277 IPR031127 GO:0004842|GO:0016567
Chy03g00386 625 Gene3D - 595 625 - -
Chy03g00386 625 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 293 572 - -
Chy03g00386 625 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 69 277 - -
Chy03g00386 625 MobiDBLite consensus disorder prediction 557 577 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00386 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101223037 1117.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00386 Chy-Chr3:5373605 Chy05g00713 Chy-Chr5:9450648 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy11g00408 . 164 590 ARIADNE family AT4G34370 72.7 2.0e-184 642.1
Chy11g00408 . 58 542 ARIADNE family AT2G16090 77.4 1.5e-225 778.9
Chy11g00408 . 28 543 ARIADNE family AT3G27710 61.9 1.0e-185 646.7
Chy11g00408 . 44 522 ARIADNE family AT3G27720 54.5 5.1e-144 508.1
Chy03g00386 . 69 563 ARIADNE family AT1G05890 68.7 2.7e-208 721.8
Chy05g00713 . 1 391 ARIADNE family AT1G05890 60.7 1.3e-154 543.5
Chy05g00715 . 1 139 ARIADNE family AT1G05890 69.8 2.3e-50 197.2
Chy03g00386 . 67 622 ARIADNE family AT1G65430 66.5 5.3e-230 793.9
Chy05g00713 . 20 392 ARIADNE family AT1G65430 74.4 4.4e-176 614.8
Chy05g00715 . 1 195 ARIADNE family AT1G65430 69.2 2.1e-69 260.4
Chy03g00386 . 69 488 ARIADNE family AT2G31780 53.7 2.5e-134 475.7
Chy05g00713 . 9 392 ARIADNE family AT2G31780 51.9 1.1e-121 433.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00386 Chy_Chr03 FPKM 22.911484 26.473761 7.674983 7.511693 12.164656 12.623235 12.77506 3.568126 3.64592 3.898026