Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00403 ATGGATGTCGTCGACCCCGGCGAGGCAGCAGTGACGACCGAGACGGGAGATGCTCATGATGTTGGGGACAGCGGTGGTGGCGGTAGTGGAAACGGATCGAATTCCGGCGAAGAAGAAAAGGGGTCATCTTTGTTGTTGTTCGAAGATGGAGAGCTTGGATTCAATCGAACTCCAAAGAAATGCAAAGAGAAATTTGAGAATGTTTATAAATATCACAAGAGAACCAAAGATGTTCGAAGCGGGAAATCCGATAATAGCAAAAAAGTTTATAGATTTTCAGATGAATTGGAGGCTTTTGATCATCCTACTAGCCATCATCAAAATCACATGTTACTTCAATCTCACCATCACCACCACCCGTTACCGCCACCGCCACCACAAGTTCTTCCTACGACGACACCACCGCCGTCTTACAACCCTCCCGCAACCAAAACAATCAGCTCTACTGTTCCATCCCCCATGAATAACACTACGACAAACAACACTTTGCCACCAAAGTCCTCTAATAACCCTCTTTCCAATTTGCCAAACATGGCTGCCAATGTGATATTTTCGAGCTCCACATCGTCATCGACAGCATCGGAGGAAGATCCGTTTCAGAGTAGCAGGAGGAGAAGGAGGAAGAGAAAGTGGAGTGATTTCTTCTTGAGGTTGACAAAGGAAGTAATAGAGAAGCAAGAGGGGCTTCAACTAAAATTCTTAGAAGCTTTAGAGAGAATAGAGAATCAAAGAAAATTGAGAGATGAAGCATGGAGAATGAAAGAGATGACAAGGGTTAATCAAGAACATGAAGTTTTAGTTCAAGAAATGTCCATGGCCGCTGCCAAAGACGCAGCAGTGGTCGCATTTTTACAAAAGATAGCTCCGTTTTCTTCTCCACCAGTGCCAGTACCACCACCACCGACGACGACTCAACCACAAAACAGCGAGAATAATGGAAAGTTGAGCTCCACTATCGGAAGCCATGTAATCTCGATGACGACGACAAATGGAAAGGTGATGAGTAGCATTATTGTAGGAAGCCCATCAAGATGGCCAAAAGGTGAAGTTGAAGCATTGATAAGGCTAAGGACAGAAATGGAAATGAAGTATCAAGAGAATGGGCCAAAAGGGTTATTATGGGAAGAGATTTCATCAGCAATGAGAGGGCTTGGATACAATAGAAGCTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATATTTCAAAAAGGTTAAATATAGCAACAAGAAGAGGCCAGAAGATTCCAAGACATGTCCTTACTTTCACCAATTGGATGCTCTTTATAGAGAGAAAGAGAAAAGTAATATGAATTTTGATATCAATAGCCAAATGGAGCCATTGATGGTCGAACCAGAACAACAATGGCCACCTGCATTCCAACCCAATAATAATCAAGTCATGGGAAATAATTTACAAAGAATAAGTGGTGAAGCAAATCAAGAAGAAGAAGAAGATGATCATGGTGATGATGATGATGATGTTGAAGAAGAGGATATTGGAGGTAGTAGTAGCACAGATGTTGAAGATTGA 1539 42.24 MDVVDPGEAAVTTETGDAHDVGDSGGGGSGNGSNSGEEEKGSSLLLFEDGELGFNRTPKKCKEKFENVYKYHKRTKDVRSGKSDNSKKVYRFSDELEAFDHPTSHHQNHMLLQSHHHHHPLPPPPPQVLPTTTPPPSYNPPATKTISSTVPSPMNNTTTNNTLPPKSSNNPLSNLPNMAANVIFSSSTSSSTASEEDPFQSSRRRRRKRKWSDFFLRLTKEVIEKQEGLQLKFLEALERIENQRKLRDEAWRMKEMTRVNQEHEVLVQEMSMAAAKDAAVVAFLQKIAPFSSPPVPVPPPPTTTQPQNSENNGKLSSTIGSHVISMTTTNGKVMSSIIVGSPSRWPKGEVEALIRLRTEMEMKYQENGPKGLLWEEISSAMRGLGYNRSSKRCKEKWENINKYFKKVKYSNKKRPEDSKTCPYFHQLDALYREKEKSNMNFDINSQMEPLMVEPEQQWPPAFQPNNNQVMGNNLQRISGEANQEEEEDDHGDDDDDVEEEDIGGSSSTDVED* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5743215 5745485 + Chy3G053830.1 Chy03g00403 222564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00403 512 MobiDBLite consensus disorder prediction 457 512 - -
Chy03g00403 512 MobiDBLite consensus disorder prediction 292 315 - -
Chy03g00403 512 MobiDBLite consensus disorder prediction 1 47 - -
Chy03g00403 512 PANTHER - 51 501 - -
Chy03g00403 512 MobiDBLite consensus disorder prediction 111 206 - -
Chy03g00403 512 MobiDBLite consensus disorder prediction 118 141 - -
Chy03g00403 512 MobiDBLite consensus disorder prediction 142 197 - -
Chy03g00403 512 MobiDBLite consensus disorder prediction 459 479 - -
Chy03g00403 512 Gene3D - 50 74 - -
Chy03g00403 512 Gene3D - 345 406 - -
Chy03g00403 512 SMART sant 341 403 IPR001005 -
Chy03g00403 512 CDD GT1 343 408 - -
Chy03g00403 512 Pfam Myb/SANT-like DNA-binding domain 343 430 IPR044822 -
Chy03g00403 512 MobiDBLite consensus disorder prediction 482 512 - -
Chy03g00403 512 ProSiteProfiles Myb-like domain profile. 343 401 IPR001005 -
Chy03g00403 512 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 51 501 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00403 Chy-Chr3:5743215 Chy11g00062 Chy-Chr11:652966 5.86E-16 dispersed
Chy03g00403 Chy-Chr3:5743215 Chy03g00405 Chy-Chr3:5822256 1.37E-06 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17662 PF13837 Myb_DNA-bind_4 8.00E-22 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00403 - - csv:101207491 749.969