Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy03g00407 | ATGTCGTTTCGTAGTATAGTTCGTGACGTTAGAGAGGGTTTTGGAAGTTTATCCAGGCGTAGTTTTGAGGTGAGACTGCCCGGTCACCAGCGGGGTAAATCTCATGGATCAATCCATGATTTGCACGACCAACCTCTGGTAATTCAAACCAGTCGTTGGGCTAGTCTCCCACCTGAGCTATTGCGGGATGTAGTCACGAGACTGGAGGAGAGTGAGAGTGTGTGGCCTGCTCGAAAACATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAATCCGGAGTTCTCTGGAAAAATTACCTTCCCTGTCTCCTTAAAACAGCCAGGGACTCGGAATGGAACCATTCAGTGCTTTATTAAGAGGGACAAATCTAATTTGACTTATCACCTTTACCTCTGCCTAAGTCCTGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCCAAAAGAACGAGGAGAACAACCTGCACTGAATACGTGATCTCCATGGATGCAGATAATATATCAAGATCAAGCAACACCTACATTGGAAAACTAAGGTAG | 573 | 44.68 | MSFRSIVRDVREGFGSLSRRSFEVRLPGHQRGKSHGSIHDLHDQPLVIQTSRWASLPPELLRDVVTRLEESESVWPARKHVVACAAVCRSWREMCKEIVKNPEFSGKITFPVSLKQPGTRNGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLR* | 191 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 6030423 | 6031817 | + | Chy3G053870.1 | Chy03g00407 | 222568 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy03g00407 | 190 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 190 | IPR025659 | - | |
| Chy03g00407 | 190 | SUPERFAMILY | F-box domain | 49 | 96 | IPR036047 | GO:0005515 | |
| Chy03g00407 | 190 | Pfam | Tub family | 114 | 190 | IPR000007 | - | |
| Chy03g00407 | 190 | Gene3D | - | 48 | 101 | - | - | |
| Chy03g00407 | 190 | Gene3D | Tubby Protein; Chain A | 110 | 190 | IPR025659 | - | |
| Chy03g00407 | 190 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 1 | 1 | 190 | - | - | |
| Chy03g00407 | 190 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
| Chy03g00407 | 190 | PRINTS | Tubby superfamily signature | 185 | 190 | IPR000007 | - | |
| Chy03g00407 | 190 | PANTHER | TUBBY-RELATED | 1 | 190 | - | - | |
| Chy03g00407 | 190 | Pfam | F-box domain | 53 | 101 | IPR001810 | GO:0005515 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy03g00407 | Chy-Chr3:6030423 | Chy03g00507 | Chy-Chr3:6981256 | 3.51E-113 | dispersed | |
| Chy03g00407 | Chy-Chr3:6030423 | Chy11g01469 | Chy-Chr11:21443334 | 7.51E-58 | transposed | |
| Chy03g00407 | Chy-Chr3:6030423 | Chy04g00489 | Chy-Chr4:4705059 | 1.64E-57 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 17664 | PF01167 | Tub | 1.10E-26 | CL0395 | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy03g00407 | K19600 | - | csv:101206041 | 384.03 |