Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00475 ATGGCGGCTACAGTTACGGCTCCGGCGACGGCCGCTACAGTTCAAACGGCGGTGATTCCTCCTCCGACGGCCGCTGTGGCCACTGGAGGCGGGTTTTTGAGTTCTTCATTGTATGTAGGCGATCTGGACCAGAGCGTGAACGAGGGACAGCTTTTGGAACTGTTCGGCCAAGTGGCTCAGGTTGTATCCATTAGGGTTTGCAGGGATCAGACACGCAGACAATCGCTTGGATATGCTTATGTTAATTTTAGCAGCCATCAGGATGCTGTCAATGCCATGGAGCATTTGAATTTCACGCCTGTTAATGGGAAGCCTATCAGGATTATGATATCTAATCGAGATCCTAGCATTCGAAAAAGTGGCTATGCAAATGTTTTTATCAAAAATCTGGACTTATCAATTGATAACAAGGCGTTACGTGATACATTTGCTGCTTTTGGTACTGTCCTTTCTTGTAAAGTTGCTGTAGATAGCAATGGACAGTCAAAAGGTTACGGATTTGTGCAATTTGAAAGTGAGGAATCAGCTGAAATTTCCATAGAAAAGTTGAATGGCATGCTGCTCAATGATAAGCAAGTTTATGTTGGGCATTTTATTCGACACCAAGAAAGGATTCGAGCAAATGGATCACAGTTTACTAATGTTTATGTGAAAAACTTACCAGAAACTACCACAGATGATGACCTAAAAAATCTTTTTACTCCACATGGTACCATTACTAGTGCAATTGTCATGACTGATTCAAATGGGAAGTCCAAATGTTTTGGTTTTGTGAACTTCCAGAACACAGACTCTGCTGCTGCTGCAGTTGAAAAGTTGGACGGTACCGTCCTTGGAGATGACAAGACTTTGTACGTAGGTAGGGCTCAAAGGAAAGCAGAAAGGGAGGCTGAGTTGAAAGCAAAATTTGAACAGGAAAGAAAGAGTAGATTTGAAAAATTACAAGGTGCAAATTTGTATATAAAAAATCTTGATGACCATATTGATGATGAGAAACTTAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTTATGCTTGACCAACATGGACTGAGCAAAGGATCTGGTTTTGTTGCCTTTTCCTCACCAGATGAAGCAGCCCAAGCCTTAAATGAAATGAATGGAAAGATGAAAGGAAGGAAGCCTCTCTATGTGGCTGTTGCCCAGCGCAAGGAAGAAAGAAAGGCTCGGTTGCAGGCACAATTTGCTCAGATCCGAGCAGCTGGTGGAATACCATCTTTGCCTTCTGGAATTCCAGGATTTCATCCAGGGGCAGCACGAGTTTCACCTCAGCAAATGTATTATGGTCAGGGAAACCCTGGGCTAGCGCCCCCGCAGCCTGCTGGATATGGTTTCCAGCCTCAACTCATGAGTGGGATGCGACCTGGTATGGGCCCGAACTTCCTCATGCCATACCAATTTCAAAGGCAAGGACAGCCCGGGCCACGCTCAGGGGTGAGGCGAGGTGGAAATTCACAACCTTTACCGCAGCAGCAGTTACCACTCCGTGGCTACGGACAAAGCTTTAGATACATGAACAATGCACGAAATGGATTAGAGTCGCCTGTCCTGCCCCAAGGTCTTGTTAGTCCGATGATGCCTCTAGCTTTTGACGGTTCTGGAGTGTCTAGCCCTCCCAATGACATCCAGCGATCAAGGGCCGTGCCTACCTCAACACTTGCTTCTGCATTAGCTTCCGCTTCACTAGAAAACCAACGTGTGACAAATATGAAACCATATTTCTTACATGAAACATGCCATTTAACTGTACTTTCTGGCTGCTGCATTATATTGACACAGATGCTGGGCGAGCAGTTGTATCCACTTGTGGAACGTCTCGAGCCAAGTCATGCTGCAAAGGTTACTGGAATGTTGCTGGAGATGGACCAACCGGAGGTACTTCATCTCATCGAGTCACCCGATGACTTGAAGAGTAAGGTGGCTGAGGCAATGGAAGTCCTTCGCAAAGCTTCATCGGAACCCGAGCTTTCTGATCAGCTTGGTGCATTGACCCTGACCAAATGA 2037 45.7 MAATVTAPATAATVQTAVIPPPTAAVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDDLKNLFTPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEAAQALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGIPSLPSGIPGFHPGAARVSPQQMYYGQGNPGLAPPQPAGYGFQPQLMSGMRPGMGPNFLMPYQFQRQGQPGPRSGVRRGGNSQPLPQQQLPLRGYGQSFRYMNNARNGLESPVLPQGLVSPMMPLAFDGSGVSSPPNDIQRSRAVPTSTLASALASASLENQRVTNMKPYFLHETCHLTVLSGCCIILTQMLGEQLYPLVERLEPSHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPELSDQLGALTLTK* 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6640587 6643759 + Chy3G054550.1 Chy03g00475 222636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00475 678 Gene3D - 602 663 - -
Chy03g00475 678 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Chy03g00475 678 PANTHER RNA BINDING PROTEIN 35 578 - -
Chy03g00475 678 PANTHER RNA BINDING PROTEIN 604 666 - -
Chy03g00475 678 SMART poly_2 603 661 IPR002004 GO:0003723
Chy03g00475 678 CDD RRM1_I_PABPs 36 115 - -
Chy03g00475 678 SUPERFAMILY RNA-binding domain, RBD 35 200 IPR035979 GO:0003676
Chy03g00475 678 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Chy03g00475 678 PANTHER POLYADENYLATE-BINDING PROTEIN 604 666 - -
Chy03g00475 678 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 586 663 IPR002004 GO:0003723
Chy03g00475 678 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 193 IPR000504 GO:0003723
Chy03g00475 678 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 280 IPR000504 GO:0003723
Chy03g00475 678 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Chy03g00475 678 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 387 IPR000504 GO:0003723
Chy03g00475 678 PRINTS Paraneoplastic encephalomyelitis antigen family signature 213 228 IPR002343 GO:0003723|GO:1990904
Chy03g00475 678 PRINTS Paraneoplastic encephalomyelitis antigen family signature 304 321 IPR002343 GO:0003723|GO:1990904
Chy03g00475 678 PRINTS Paraneoplastic encephalomyelitis antigen family signature 337 349 IPR002343 GO:0003723|GO:1990904
Chy03g00475 678 PRINTS Paraneoplastic encephalomyelitis antigen family signature 322 337 IPR002343 GO:0003723|GO:1990904
Chy03g00475 678 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 195 IPR000504 GO:0003723
Chy03g00475 678 Gene3D - 33 122 IPR012677 -
Chy03g00475 678 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723
Chy03g00475 678 CDD RRM3_I_PABPs 212 292 - -
Chy03g00475 678 SMART rrm1_1 318 390 IPR000504 GO:0003723
Chy03g00475 678 SMART rrm1_1 36 109 IPR000504 GO:0003723
Chy03g00475 678 SMART rrm1_1 124 196 IPR000504 GO:0003723
Chy03g00475 678 SMART rrm1_1 214 287 IPR000504 GO:0003723
Chy03g00475 678 CDD RRM4_I_PABPs 316 394 - -
Chy03g00475 678 Pfam Poly-adenylate binding protein, unique domain 603 658 IPR002004 GO:0003723
Chy03g00475 678 CDD RRM2_I_PABPs 121 197 IPR045305 -
Chy03g00475 678 SMART rrm2_1 318 389 IPR003954 GO:0003676
Chy03g00475 678 SMART rrm2_1 124 196 IPR003954 GO:0003676
Chy03g00475 678 SMART rrm2_1 214 286 IPR003954 GO:0003676
Chy03g00475 678 SMART rrm2_1 36 109 IPR003954 GO:0003676
Chy03g00475 678 Coils Coil 286 306 - -
Chy03g00475 678 SUPERFAMILY PABC (PABP) domain 604 665 IPR036053 GO:0003723
Chy03g00475 678 MobiDBLite consensus disorder prediction 476 504 - -
Chy03g00475 678 Gene3D - 199 302 IPR012677 -
Chy03g00475 678 Gene3D - 303 405 IPR012677 -
Chy03g00475 678 Gene3D - 123 197 IPR012677 -
Chy03g00475 678 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 35 659 IPR006515 GO:0003723
Chy03g00475 678 SUPERFAMILY RNA-binding domain, RBD 212 398 IPR035979 GO:0003676
Chy03g00475 678 Coils Coil 392 412 - -
Chy03g00475 678 PANTHER POLYADENYLATE-BINDING PROTEIN 35 578 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00475 Chy-Chr3:6640587 Chy06g01071 Chy-Chr6:8732649 0 dispersed
Chy06g00338 Chy-Chr6:2245198 Chy03g00475 Chy-Chr3:6640587 9.57E-10 dispersed
Chy07g01183 Chy-Chr7:16665468 Chy03g00475 Chy-Chr3:6640587 2.91E-06 dispersed
Chy11g01281 Chy-Chr11:18999840 Chy03g00475 Chy-Chr3:6640587 6.46E-06 dispersed
Chy03g00475 Chy-Chr3:6640587 Chy01g00064 Chy-Chr1:474595 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00475 K13126 - csv:101219081 1191.41