Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00484 ATGAGGCACAATTCCAAGAATCAACCTCAGCTTTTCTGGCCCAGAGTGGTCTTGCGTAAATGGCTTAATATCAGCGCTAAGGAGTCGGATTACAGTGCCGATACCGAAGATGATGAAGATTTGAATTCTTCCGATTCTGATACTGAAGACTGTCGTGTTAGGGGAAGAGAATCACGCTTTAAGGTAGACAACAGGGATGTACCACTGGTTGATGCTAATGATGTGCTGCCGAGGTTGAGAAGAAGAAATTCAGAAACGTTTAGGACGCAATATATCAACACAAAAGAACTCAGGATATGTGTTGGGACTTGGAATGCAGGAGGAAAACTACCTCCTGAAGATCTAGATATTGATGGCTGGATAGATACCAACGAGCCAGCTGATATCTATGTCCTTGGTCTCCAGGAGATTGTCCCATTGAATGCTGGAAATATATTTGGTGCTGAAGACAGTCGTCCAGTTGCAAGGTGGGAAGATATTATCCGCGAAACATTGAATAGGGTTAGACCTGCTACAACCAAGATTAAGTGCTTTAGCGATCCACCATCCCCGTCAAAATTTAAACCATCTGACGACATCCCAGATTTAGAGGAGGAGATTCTGCAGGAAAGTGATAGTGACATTGGTGAGGAAGTGCATCCCTATGATGGAGAATTCTTTGGCAAGGAAAATGTCAATGGACTAGTAGGTGATACAAATCTAAGCGTGAAGTTCCCCATTTCAGAACTTTCCGCAAATACCAAATCAGGGATACCTGTGGAACAGGATTTAATGAGGCAATATTCTTCTCCAAAGAGATTGGATCGGTTAAATTGCTTACGGACTGAAGACAGCACAGAGAATGACGAGGCTGTCTTGCTACAGAATAAAAGATTAACTAAAATGCTTAGTGGGTCAGAAAGGATTGGTCTGTGTTGGCCCGAGCCTCCACTTCACTTACTACCCCACAATGTTTTAGAGAGACCTAACTCATTTAAATCAATAAGATCGTTTAAAACATCCAAGTCCTTTGTGGCATTTAATTCTTTCAAGTCAACCATGAATGACATGCCATCTGGGGTTGCTTTACTTGGAGAAATTGATCTTGAGTCTCTGCTAAAACGAAAGAGAAGATCCTCCTATGTTAGAATAGTAAGTAAACAAATGGTTGGTATTTTCCTCACAATATGGGTTCGTAGGAGTTTGCGAAGGCACATTCAGAATGTAAATGTATCTACTGTTGGTGTTGGTGTAATGGGCTACATTGGCAACAAGGGATCCATATCTGTCAGCATGTCCATATATCAGACCCTCTTTTGCTTTATATGCACTCACCTGACTTCAGGTGAAAAGGAGGGAGATGAACTTAAAAGGAATGCTGACGTGAATGAAATACATCGAAGAACTCAATTCCATCCACTTAATGGTGTTGGGTTTCCTAAAATAATCCACGACCACGAGCGGATAATCTGGTTGGGTGATTTAAATTACCGGATCAACTTGTCTTATGAGAAGACGAGAGAGCTTATCTCGAGAAAAGAGTGGTCCAAATTGGCTGAGAGTGATCAGTTATTACGAGAGCTTAGGAAGGGTCGTGCATTTGATGGATGGACTGAGGGAAACCTAAGTTTTGCTCCGACCTACAAATACGAGAACAATTCAGATAAGTATTACGGTGAAGATCCAAAAGTTGGAAGGCGTACTCCAGCATGGTGTGACCGTATACTCTCATACGGCAAAGGATTGAAATTGTGCAGTTATAGGAGGACTGAAATTAAATTTTCTGATCATAGACCAGTGACAGCCACCTATGTGGCCGAGGTCGAGGTTTTCTGTCCTCGTAAGCTACAACGTGCTCTAACATTTACAGACGCAGAGATTGAAAATGAGGAAATAGCATTGGATGTATACTGA 1893 42.0 MRHNSKNQPQLFWPRVVLRKWLNISAKESDYSADTEDDEDLNSSDSDTEDCRVRGRESRFKVDNRDVPLVDANDVLPRLRRRNSETFRTQYINTKELRICVGTWNAGGKLPPEDLDIDGWIDTNEPADIYVLGLQEIVPLNAGNIFGAEDSRPVARWEDIIRETLNRVRPATTKIKCFSDPPSPSKFKPSDDIPDLEEEILQESDSDIGEEVHPYDGEFFGKENVNGLVGDTNLSVKFPISELSANTKSGIPVEQDLMRQYSSPKRLDRLNCLRTEDSTENDEAVLLQNKRLTKMLSGSERIGLCWPEPPLHLLPHNVLERPNSFKSIRSFKTSKSFVAFNSFKSTMNDMPSGVALLGEIDLESLLKRKRRSSYVRIVSKQMVGIFLTIWVRRSLRRHIQNVNVSTVGVGVMGYIGNKGSISVSMSIYQTLFCFICTHLTSGEKEGDELKRNADVNEIHRRTQFHPLNGVGFPKIIHDHERIIWLGDLNYRINLSYEKTRELISRKEWSKLAESDQLLRELRKGRAFDGWTEGNLSFAPTYKYENNSDKYYGEDPKVGRRTPAWCDRILSYGKGLKLCSYRRTEIKFSDHRPVTATYVAEVEVFCPRKLQRALTFTDAEIENEEIALDVY* 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6722511 6728427 + Chy3G054640.1 Chy03g00484 222645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00484 630 SUPERFAMILY DNase I-like 86 615 IPR036691 -
Chy03g00484 630 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 11 626 IPR045849 GO:0004445|GO:0046855
Chy03g00484 630 SMART i5p_5 307 605 IPR000300 GO:0016791|GO:0046856
Chy03g00484 630 Gene3D Endonuclease/exonuclease/phosphatase 76 180 IPR036691 -
Chy03g00484 630 Gene3D Endonuclease/exonuclease/phosphatase 330 627 IPR036691 -
Chy03g00484 630 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 3 11 626 - -
Chy03g00484 630 MobiDBLite consensus disorder prediction 32 52 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00484 - - - csv:101220281 1240.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00484 Chy-Chr3:6722511 Chy06g02118 Chy-Chr6:25400858 2.19E-168 dispersed
Chy10g00705 Chy-Chr10:13395291 Chy03g00484 Chy-Chr3:6722511 4.84E-27 dispersed
Chy03g00484 Chy-Chr3:6722511 Chy01g01550 Chy-Chr1:21407350 4.14E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g807 . . Bda14g00019 . Bpe04g01633 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0591 . . . . . . . . Bpe04g01633 Bpe15g01380 Bma03g00024 . . Cmo04g02609 . . . Car04g02401 Car15g00506 . Cpe01g02157 . . . . . . . . . . . . . . . . Chy03g00484 .
Vvi18g1334 . . . . . . . . Cmo04g02580 Cmo15g00580 . . . . . . Cpe13g00701 Bhi04g01737 . . . . . . Cla08g00742 Cam08g1169 Cec08g0759 Cco08g0867 Clacu08g0876 . Cre08g0677 . . Cone17ag0768 Cone20ag0358 . . . . . . . Bda13g01416 . . Bma01g01429 . . . . . . Car04g02373 Car15g00534 Cpe01g02134 . . . . . . . . . . . . . . . Lsi08g00578 . Chy03g00484 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003115 1 10 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00484 Chy_Chr03 FPKM 12.458776 14.398891 12.977627 13.690133 11.053219 13.449587 13.644852 10.791554 10.948686 11.541369