Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00494 ATGGGGCGAACGCTGAGCCATTCCGTATTGCAAACAAATATATCATTCCAAGAATTTGACTATACCATTGCCGAGACGTGTCTAGGACGATGGATGTGGGATGTGGAGGGGTTTCCGGTGTGGGATCCGAAACAGAATGTTGTTAGCGTGTTGGATTATATTGGGGAATTTAGATCGAAGCAGAGAATGAAGATCAGATGGTTGCCTCCTGCTACCGGTGAGATTGAGCTCAACGTGGATGCATCTATTCACTCATCAGAGAGGTTTGGGAAAGAGATGTCAATTGCAGTTGTTGAAGCTGAAGATTTGGCTTCATGTGACCTTTCAAATGGACTTATCTTAAGTTCATCTACGCGCGTGCAGGAAGCCCTATCGCGTCGAATCCGCAAGAATTTCGTATTTACCAGGATTCAGGAAAATGTGAAACCTGCCTACATCGCGGATCAAAATATTGAAGGACTGCCAGATTACAAAGATATCAAACAAAATGAATTTTGTTATCGGAAACACAAGAAGCAGAAGGAGGAGGATATTGCAGTTTGCGAATGCAAGTTTGATGCTAATGATAACGATAGTGCTTGTGGGGAGGGTTGCTTGAATGTATTAACTAGCACTGAGTGTACTCCTGGACATTGTCCCTCTGGTGTTCATTGCAGGAATCAGAGATTTCAGAAATGTGAGTATGCAAAAACAAAGTTGTTCAAAACAGAAGGCCGTGGGTGGGGCCTTTTAGCTGATGAGAACATCAAGAATGGACAGTTTATTATTGAATATTGTGGGGAAGTTATTTCTTGGAAGGAAGCAAAGCGTAGATCCCACACTTACGAAAATCAGGGGCTCAAAGATGCTTACATCATCTCTCTCAATGCCTCTGAATCAATCGATGCCACTAGAAAGGGAAGTCTTGCTAGATTTATAAATCATTCTTGCTTCCCAAACTGTGAGACAAGGAAGTGGAATGTGTTGGGTGAAATAAGGGTTGGAATATTTGCAAAGCAAGACATTTCCATTGGGACTGAGTTGGCATATGATTATAATTTTGAATGGTATGGAGGTGCCAAGGTTCGCTGCCTCTGTGGTGCGAGCAGCTGTTCAGGATTCCTCGGAGCCAAGTCCCGTGGCTTCCTGGAGGATACCTATTTGTGGGAAGATGACGATGATAGGTATTCTGTTGAGAAAATTCCACTTTACGATTCCGCAGAGGATGATGAGCCTTACGTTAAGCTCCACACAGCATTGAATAACACATATTCTGAGTTTGAAGGTTACCTGAAAAATGAGGACCCAATGATCATGGACGATGATTTGGGAGCTGAACAGCAGCTGGGATCTACTGCATTTATTGATACCTCAAAGGATACGGTTCAATTGCAAGATATAGTTGTAGGAGAAATTAAAAATGAAGCAAAAGAGGAGCCAGAAGATCATCCACAAAATACGCAGCAGAACTTTTCTCATCAAAATGCAATGATACCTCGTATTCGAACTAATACTGCTTGCCATAACTATCGCATTGGACCTAGACCTGTGGCCAAGAAACGTTCAAGAAACTTATCTAATGGAAGGACAAAAAAAATTTCTCTGAAGCAAGTAGATGCCAAATATGTTGCTCGACTGTTAGAGATGAAAGAAGCACAGGACGAAGTCTTACAGTTCGAGGAAACAAAGAATAAAGTGAGTGCCGAACTTGATTCGTTGTACAATGAAATACGACCTGCCATTGAAGAATATGAAAGAGATAGTCAAGACAGCGTAGCTACAAGTGTTGCGGAAAAGTGGATAGAAGCAAGCTGTTTGAAACTGAAGGCAGAATTTGATCTTTATTCTTCTATAGTAAGAAATGTTGCTTGCACTCCTTTAAGGTCAGGTGTCTCTACTGAACCTCAAGTCCTCGAAGAAGACGGCGACAACGACCTGAAATTGTTAACTAATTAG 1935 41.91 MGRTLSHSVLQTNISFQEFDYTIAETCLGRWMWDVEGFPVWDPKQNVVSVLDYIGEFRSKQRMKIRWLPPATGEIELNVDASIHSSERFGKEMSIAVVEAEDLASCDLSNGLILSSSTRVQEALSRRIRKNFVFTRIQENVKPAYIADQNIEGLPDYKDIKQNEFCYRKHKKQKEEDIAVCECKFDANDNDSACGEGCLNVLTSTECTPGHCPSGVHCRNQRFQKCEYAKTKLFKTEGRGWGLLADENIKNGQFIIEYCGEVISWKEAKRRSHTYENQGLKDAYIISLNASESIDATRKGSLARFINHSCFPNCETRKWNVLGEIRVGIFAKQDISIGTELAYDYNFEWYGGAKVRCLCGASSCSGFLGAKSRGFLEDTYLWEDDDDRYSVEKIPLYDSAEDDEPYVKLHTALNNTYSEFEGYLKNEDPMIMDDDLGAEQQLGSTAFIDTSKDTVQLQDIVVGEIKNEAKEEPEDHPQNTQQNFSHQNAMIPRIRTNTACHNYRIGPRPVAKKRSRNLSNGRTKKISLKQVDAKYVARLLEMKEAQDEVLQFEETKNKVSAELDSLYNEIRPAIEEYERDSQDSVATSVAEKWIEASCLKLKAEFDLYSSIVRNVACTPLRSGVSTEPQVLEEDGDNDLKLLTN* 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6833266 6844410 - Chy3G054740.1 Chy03g00494 222655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00494 644 ProSiteProfiles AWS domain profile. 176 227 IPR006560 GO:0005634|GO:0018024
Chy03g00494 644 Pfam SET domain 240 346 IPR001214 GO:0005515
Chy03g00494 644 ProSiteProfiles SET domain profile. 229 346 IPR001214 GO:0005515
Chy03g00494 644 SMART set_7 229 352 IPR001214 GO:0005515
Chy03g00494 644 Gene3D SET domain 124 379 IPR046341 -
Chy03g00494 644 ProSiteProfiles Post-SET domain profile. 353 369 IPR003616 -
Chy03g00494 644 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 151 581 - -
Chy03g00494 644 SMART shorttest3 176 228 IPR006560 GO:0005634|GO:0018024
Chy03g00494 644 SUPERFAMILY SET domain 156 366 IPR046341 -
Chy03g00494 644 PANTHER SET DOMAIN PROTEINS 151 581 - -
Chy03g00494 644 Coils Coil 542 569 - -
Chy03g00494 644 Pfam AWS domain 189 226 IPR006560 GO:0005634|GO:0018024
Chy03g00494 644 SMART PostSET_3 353 369 IPR003616 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00494 - - - csv:101222397 994.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00494 Chy-Chr3:6833266 Chy03g00750 Chy-Chr3:10047496 5.81E-53 dispersed
Chy07g01638 Chy-Chr7:20389627 Chy03g00494 Chy-Chr3:6833266 1.32E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1348 . . . . . . . . . Cmo15g00591 . . . . . . . Bhi04g01759 Tan11g1119 . . . . . . . . . . . . . . . . . . . Cme03g00297 . . . . . . . . . . . . . . Car15g00543 . . . . . . . . . . . . . . . . . . Chy03g00494 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010525 1 2 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17669 PF00856 SET 3.30E-18 No_clan Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00494 Chy_Chr03 FPKM 45.455311 48.83651 38.462341 39.402016 23.151911 19.100344 25.966354 55.297382 56.689514 53.654572