Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00496 ATGTGCTCCTTGAAAGTGGCGAATCGGCGAGGAATTGGAAGTGACTTGGCACAATTTCCAAGTGGCGGCGCCGGAGATGGAGACGGTGACAATGGTGGCGGCGGCAGCAGCAGCAGCGACGACCCTCATAGACTATTATATGGTCAACGTGATGACGGCGATTATTACTCTGCCGTTGGAGAAGTTTCCACGATTGTGTCTACGTTAACTAATGTAATGTCTGGGCAGGCGGCTCCCGATTGGGGCTACGGCGGGGGGCAGGGTTTTCCGAGGGGTTTTGTTTCTTCCTCTTCTTCTTCTTCGACGACATCGGCATCGGGTTCTTCGGGTTCGGAGCTGAACTATGTTCCGGGGATGAGTAGTTATTGGGTTGGCCAAAAACGAATGCGTGAAGAAGAAATTAGTGCTCAAACACAGCATGATATTCATTCTGTTTCGAGGGGTTTTAGTTTTATTAGGGGTTTTGATCATCATTTTTCTCAACCACAATCTTCCATTCCTCCAGTCAAAGAAGAGGTTCCACCTCCACCGCACACCGCCGTTTCAACTCCCGCCGCCGCCTTCGCAGCCTCGTCGATGACATCCAACGACGCGGTAGTCATCGGCGAGAGAAGACGACGATACAGAGGAGTACGACAACGTCCCTGGGGGAAATGGGCGGCGGAGATTCGCGACCCACATAAGGCGGCGAGAGTTTGGCTTGGCACCTTCGATACGGCGGAGGCTGCTGCTCGAGCCTACGACGAAGCAGCCCTCAGATTCAGAGGAAATAGAGCAAAACTAAATTTCCCTGAAAATGTCAGATTAATTCATCCGCCGCAACACATTCCGGCGTCCGCCGCGCCCCAAATTGCTCCGCAGCAGACGGCGGCGTTTCAGAGCCAAAATTACCGAGATTACATTGAATATTCCAATTTGCTTCAGAACCCCGGCGATATTCTCGGGCAGCCTTCGAGTTTACTGCAACAAATGTTCTATAATGCGCACTTGCCTCCATTTGAATCCTCGTCGTCGACGGCTCCGGCACCGTCGATGTCCTCTGTTTCGAATTCTGTTTTTTTCACTCCGACATTGCAACAGCAGCAAATGGGGATTTTCCGACAGCCGCCGCAAAATCAAAATCAGGGTGGCTCCGATTACTTTCCGGCTACTTCATGGGATGATTCCGGCGGCCAGTATCCTTCTTCGTCGTCCGGTTGA 1200 52.08 MCSLKVANRRGIGSDLAQFPSGGAGDGDGDNGGGGSSSSDDPHRLLYGQRDDGDYYSAVGEVSTIVSTLTNVMSGQAAPDWGYGGGQGFPRGFVSSSSSSSTTSASGSSGSELNYVPGMSSYWVGQKRMREEEISAQTQHDIHSVSRGFSFIRGFDHHFSQPQSSIPPVKEEVPPPPHTAVSTPAAAFAASSMTSNDAVVIGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRLIHPPQHIPASAAPQIAPQQTAAFQSQNYRDYIEYSNLLQNPGDILGQPSSLLQQMFYNAHLPPFESSSSTAPAPSMSSVSNSVFFTPTLQQQQMGIFRQPPQNQNQGGSDYFPATSWDDSGGQYPSSSSG* 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6863400 6865205 - Chy3G054760.1 Chy03g00496 222657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00496 399 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 59 395 - -
Chy03g00496 399 PANTHER DNA-BINDING DOMAIN 59 395 IPR044808 GO:0003700|GO:0009873
Chy03g00496 399 SMART rav1_2 207 270 IPR001471 GO:0003700|GO:0006355
Chy03g00496 399 MobiDBLite consensus disorder prediction 364 382 - -
Chy03g00496 399 Pfam AP2 domain 207 256 IPR001471 GO:0003700|GO:0006355
Chy03g00496 399 ProSiteProfiles AP2/ERF domain profile. 207 264 IPR001471 GO:0003700|GO:0006355
Chy03g00496 399 SUPERFAMILY DNA-binding domain 207 265 IPR016177 GO:0003677
Chy03g00496 399 PRINTS Ethylene responsive element binding protein signature 208 219 IPR001471 GO:0003700|GO:0006355
Chy03g00496 399 PRINTS Ethylene responsive element binding protein signature 230 246 IPR001471 GO:0003700|GO:0006355
Chy03g00496 399 MobiDBLite consensus disorder prediction 364 399 - -
Chy03g00496 399 MobiDBLite consensus disorder prediction 14 50 - -
Chy03g00496 399 CDD AP2 215 266 IPR001471 GO:0003700|GO:0006355
Chy03g00496 399 Gene3D AP2/ERF domain 206 266 IPR036955 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00496 - - - csv:101213348 630.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00496 Chy-Chr3:6863400 Chy01g00050 Chy-Chr1:366046 3.61E-29 dispersed
Chy03g00496 Chy-Chr3:6863400 Chy02g01009 Chy-Chr2:6807260 5.81E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1351 Blo01g01736 Blo12g00779 Bda01g00864 Bda03g00400 Bpe02g00207 Bpe04g00363 Bma04g00381 Bma01g02513 Cmo04g02571 Cmo15g00593 . . . . . . . Bhi04g02173 . . . . . . Cla08g00268 Cam08g0708 Cec08g0269 Cco08g0355 Clacu08g0418 . Cre08g0246 Cone4ag1483 Cone7ag1461 Cone17ag0776 Cone20ag0368 . . . Cme03g00299 Blo17g00139 Blo18g00150 Bda11g00867 Bda13g01423 Bpe02g01101 Bpe14g00434 . Bma02g00158 . . Cmo09g01245 . . Car04g02363 Car09g01066 . . . . . . . . . . . . . . . . Lsi08g00564 . Chy03g00496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003344 4 0 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17670 PF00847 AP2 7.80E-15 CL0081 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00496 Chy_Chr03 FPKM 8.197531 7.051883 1.116178 1.206451 0.373412 0.0 1.05638 0.232355 1.245195 3.185202