Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00507 ATGTCATTCCGTAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCGAGACGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGACCAGTTCATGAGTTTAATGATGAGCCTCTGCTAATTCAGACTAGCCGTTGGGCTAGCCTTCCACCCGAATTATTATGTGATGTGGTCCGAAGACTGGAGGCAAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAATGCCCTGAATTATCTGGGAAGATTACCTTCCCAATCGCCTTGAAGCAGCCTGGGCCGCGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCTAATTTAACTTATCATCTTTATCTTTGTCTGAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCAGACGATATATCAAGATCGAGCAACGGTTATATTGGAAAGCTAAGATCAAACTTTCTGGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATTCCAACCCTAGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCACCAAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCGTATGAGTTGAATGTATTAGGTACGAGGGGGCCCCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCAGTTCCAGGCCAACCCGAGCTCAATCCTCGCCCTCTTGAAGACTCGTTTCGTAGTATCTCATTCTCCAAGTCGATCGACCATTCCACTGAGTTCAGCAGTTCCCGTTTCTCCGATGTTGCGGGCATGCTGATTGATGAAGATGGCGAGGGGAAGGATCGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTACAATGTTGGTGTCTCAACTTTCGTGGGAGGGTGACGGTTGCATCTGTAAAGAACTTTCAGCTGATTGCCGCAACCTCACCTGCTGCCGAAGCCCCCGTACCGTCGCAGCCGCATCCCCAGCCCGCCCAACCTACCCATTCTGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTTGGCAAGGACATGTTCACGATGGATTATCGATACCCGTTGTCTGCATTCCAGGCTTTTGCTATATGTCTAAGCAGCTTTGACACTAAATTGGCATGTGAATAG 1299 46.88 MSFRSILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFNDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKCPELSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLIDEDGEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPHPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6981256 6983665 - Chy3G054870.1 Chy03g00507 222668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00507 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Chy03g00507 432 Pfam Tub family 114 427 IPR000007 -
Chy03g00507 432 Gene3D - 48 104 - -
Chy03g00507 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Chy03g00507 432 MobiDBLite consensus disorder prediction 369 388 - -
Chy03g00507 432 Pfam F-box domain 53 99 IPR001810 GO:0005515
Chy03g00507 432 PANTHER TUBBY-RELATED 1 432 - -
Chy03g00507 432 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515
Chy03g00507 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
Chy03g00507 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Chy03g00507 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Chy03g00507 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Chy03g00507 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Chy03g00507 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Chy03g00507 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Chy03g00507 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Chy03g00507 432 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 432 - -
Chy03g00507 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00407 Chy-Chr3:6030423 Chy03g00507 Chy-Chr3:6981256 3.51E-113 dispersed
Chy03g00507 Chy-Chr3:6981256 Chy06g01095 Chy-Chr6:9150966 0 dispersed
Chy03g00507 Chy-Chr3:6981256 Chy06g00654 Chy-Chr6:4489235 4.60E-154 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17672 PF01167 Tub 1.00E-115 CL0395 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00507 K19600 - csv:101203074 877.856