Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00510 ATGAAGAGCTTTGTAGGTTACGTAGAGGCCATGGGGGTCCACAAGCCCTATATTGCAATGTTATTTGTTCAATGTGTTTATTCAGGAATGGCTTTGTTCTCTAAAGCAGCCATTTCTCAGAAAGGAATGAACCCAGCCATCTTCGTCTTCTATCGTCAAGCTTTTGCTACCGTTGCCATGGCTCCTCTCGCCTTCTTATTCGAACGAAAAAAGGAAGTTCCTTTATCTTTCAAGTTCCATTCCAAAGTGTTCTTGGTTTCTCTAATTGGGGTCACTTTGAGTTTAAACCTTTATTATATAGCAATCAACCATACATCAGCAACATTTGCAGCTGCCACTACCAATACCATCCCTGCCATTACCCTTCTTTTGGCTCTCCTTTTCAGATATGAAAGCATTTGCATAAGAAAAGTTGAAGGGATGGCAAAATTGGTGGGAGCAATAATAGGTTTTTCAGGGGCTTTAGTATTTGCCTTTGTGAAAGGTCCACCAATGAAATTCATGAATTGGTATCCACAAACAAAGAACATTACTAATTCATTTCAACCTTATTCCACTATGGAATGGATTAAGGGAGCATTCACTATGCTTTCAGCCAACATTGCTTGGTCTTTTTGGCTTGTTTTGCAGGGTTCGATTGTGAAGGAATGCCCAGCAAAATTGAGAGTTACAACTTTGCAATGTTTCTTTAGCTTAATACAATCAGCTGTGTGGGCTTTGGTAATGGAAAGAAACCCACAAGCTTGGAAGCTTGGATGGAATCTTCAACTCTTCTCTGTTGCCTATTGTGGTGTAATTGTGACGGGAATGACGTATTGGCTACAAATATGGAGTGTGGAGAAGAAAGGACCAGTTTTCACAGCTATGTTTACACCATTAGCACTCATCATAACAGCAATCTTTTCAGCATTGCTGTGGAAAGAATTCCTTCATTGGGGAAGTGTTGGTGGAGGTATTTTGCTTGTGCTGGGACTTTATTTTGTTCTATGGGGAAAGAAGAGAGAAGAAGAAGCAGCAGCTAAAGCCAAGATAATTGATCAACAACGACATGACACTAAAGACGAAACCATTTTGGAGTGCATTACAACACATCAATGA 1098 40.16 MKSFVGYVEAMGVHKPYIAMLFVQCVYSGMALFSKAAISQKGMNPAIFVFYRQAFATVAMAPLAFLFERKKEVPLSFKFHSKVFLVSLIGVTLSLNLYYIAINHTSATFAAATTNTIPAITLLLALLFRYESICIRKVEGMAKLVGAIIGFSGALVFAFVKGPPMKFMNWYPQTKNITNSFQPYSTMEWIKGAFTMLSANIAWSFWLVLQGSIVKECPAKLRVTTLQCFFSLIQSAVWALVMERNPQAWKLGWNLQLFSVAYCGVIVTGMTYWLQIWSVEKKGPVFTAMFTPLALIITAIFSALLWKEFLHWGSVGGGILLVLGLYFVLWGKKREEEAAAKAKIIDQQRHDTKDETILECITTHQ* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7006909 7008995 - Chy3G054900.1 Chy03g00510 222671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00510 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 150 - -
Chy03g00510 365 PANTHER WAT1-RELATED PROTEIN 13 342 - -
Chy03g00510 365 PANTHER WAT1-RELATED PROTEIN 13 342 IPR030184 GO:0016021|GO:0022857
Chy03g00510 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 227 335 - -
Chy03g00510 365 Pfam EamA-like transporter family 15 149 IPR000620 GO:0016020|GO:0016021
Chy03g00510 365 Pfam EamA-like transporter family 191 329 IPR000620 GO:0016020|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00510 - - - csv:101215033 667.537
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00510 Chy-Chr3:7006909 Chy11g00066 Chy-Chr11:684881 5.40E-91 dispersed
Chy03g00510 Chy-Chr3:7006909 Chy02g01022 Chy-Chr2:6920765 2.08E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1380 . . . . . . . . Cmo04g02564 . . . . . . . . Bhi04g01775 . . . Hepe02g2137 . Lcy10g1352 Cla08g00712 Cam08g1139 Cec08g0728 Cco08g0836 Clacu08g0847 . Cre08g0648 . . Cone17ag0785 Cone20ag0379 . . . Cme03g00317 . . . Bda13g01413 . . Bma01g00742 . . . . . . Car04g02357 . Cpe01g02117 . . . . . . . . . . . . . . . Lsi08g00554 . Chy03g00510 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000096 8 10 5 6 7 6 9 8 6 9 4 7 7 13 9 7 7 3 5 7 10 11 6 9 16 8 10 19 10 2 244
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00510 Chy_Chr03 FPKM 15.760381 17.546083 11.130946 11.468859 13.586505 13.857946 13.663741 16.715475 15.964803 15.285099