Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00541 ATGGCGGATGATTATTGGAATCGGCAGCAGCCTTTGCTTCCTTCTCCAGCCATGCTTAAACGACCTCGTACTGATTATGAACTTCCGGCCTCTGGATTGTCTACCGGCCATGATATGCACAATTATTTAACAAGTGATGATCGTGGTGGTCCTCGGTCTGTAAAAGATACACAAACAATTGGTTCGGCATATGATCGTTATCTCCAGAGTGTGCAACTTTCTTCTTTTACTTCCGGAGAAGTACCTACCCATGGAGAAATGGGCATGGGAAGGCCTGTTGCAAACAGAATGCCAGTTGGGAACAGAATGCCTGGGCCTTTATTACCTGATCCTATTGTAATGAGTCGTCCTCCTGCAGTTTCTCCTGATCTTGCACCCAATGGTCGAAATATTGAGTATGGTAATCATCTTCCTGTAGATTCGATGAGCAGACCTGGACGTGAAACTGTCCCTCTTCCTCCTGATGCCTCCAACACTTTATATGTTGAAGGACTTCCTCCAGATAGTTCCCGGCGGGAAGTAGCTCATATTTTCCGCCCCTTTGTGGGATATAAAGAATTGAGACTTGTGAGCAAAGAATCTAAACATCGTGGTGGGGACCCCCTAATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCAGCAACTGCCATGAGTGCATTGCAAGGTTATAAAATGGATGAACAAGATCCCGAATCTAATTATTTGCGACTACAGTTCTCACGACATCCAGGTCCGAGGTCTGGTTCTGGATCTGGCGGCAAAAGGTGCTATAGCAGGAATTTGGAGAGTTCCTGCATCCTCCAACACACCAAAATCAGCCTATATCACTGGTCATTCCACATACGAATCTGTGGCACCGCAGAGGGCAAGTTAACCCATCTGCTTGGAGTTGGAGAAAAAATGGGTTCTTCAATTGCAACTGCTACTATACCCCCCTTTGTTATCTCCCTTCTCCTTGCATTGGTGTCTTTGAATCTGCCATCAAAATTTAGTGCAGCATATGCTCATTATCCACCTCCTTTACCGAAAAAGCATAAGCAATCAGAGCCGCCAGTGCCACAACCTTTTGTTTCGGAGCCAATAGTTCCCTATTTTCCCTTTGTGTACGTACCAATTCCATCCCCATCTGAGAAGCCTTATGAACCACACCCACCACCACCACTAAAGCAGCCCCAATCTCCGTTATCTCCATCTTCCAACCCTCTAGTTCCTTATTTTCCTTTTGTATATGTACCATTGCCATCCCCATCTCAAAAGCCTTATGAAGTTGCAGCACCTTCGCCATCTTTAGTGTTCACACGACCTGTAGTTCCTTATTATCCCTTCCGATTTTCACCACTTTCCCCTAAAAAACTTCCGTATCCTCCTATGAATCCGATTGACCACCTTCAATTTCCTTCGCCTTTGCCTCCGTCTCCTTACTAA 1431 45.49 MADDYWNRQQPLLPSPAMLKRPRTDYELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNIEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKRCYSRNLESSCILQHTKISLYHWSFHIRICGTAEGKLTHLLGVGEKMGSSIATATIPPFVISLLLALVSLNLPSKFSAAYAHYPPPLPKKHKQSEPPVPQPFVSEPIVPYFPFVYVPIPSPSEKPYEPHPPPPLKQPQSPLSPSSNPLVPYFPFVYVPLPSPSQKPYEVAAPSPSLVFTRPVVPYYPFRFSPLSPKKLPYPPMNPIDHLQFPSPLPPSPY* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7600969 7608707 - Chy3G055210.1 Chy03g00541 222702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00541 476 CDD RRM_RBPMS_like 158 240 - -
Chy03g00541 476 SUPERFAMILY RNA-binding domain, RBD 133 254 IPR035979 GO:0003676
Chy03g00541 476 PANTHER NUCLEAR SPECKLE RNA-BINDING PROTEIN A-RELATED 8 257 - -
Chy03g00541 476 MobiDBLite consensus disorder prediction 380 399 - -
Chy03g00541 476 MobiDBLite consensus disorder prediction 78 98 - -
Chy03g00541 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 244 IPR000504 GO:0003723
Chy03g00541 476 SMART rrm1_1 159 235 IPR000504 GO:0003723
Chy03g00541 476 MobiDBLite consensus disorder prediction 1 23 - -
Chy03g00541 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 228 IPR000504 GO:0003723
Chy03g00541 476 Gene3D - 154 245 IPR012677 -
Chy03g00541 476 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 8 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00541 - - - csv:101222348 566.229
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00541 Chy-Chr3:7600969 Chy06g01177 Chy-Chr6:10441553 1.58E-42 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1253 . . . . . . . . Cmo04g02552 Cmo15g00618 . . . . Sed11g1337 . Cpe13g00671 Bhi04g01799 Tan11g1166 Cmetu03g0441 . . . . Cla08g00678 Cam08g1108 Cec08g0694 Cco08g0802 Clacu08g0814 . Cre08g0618 . . Cone17ag0793 Cone20ag0389 . . . Cme03g00377 Blo17g00216 . . Bda13g01524 . Bpe14g00337 . Bma02g00274 . . . . . Car04g02349 Car15g00561 Cpe01g02109 . . . . . . . . . . . . . . . Lsi08g00536 . Chy03g00541 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003751 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 3 1 1 1 1 1 2 5 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00541 Chy_Chr03 FPKM 4.923543 5.917093 2.799179 2.217935 8.400989 8.142657 8.04622 0.715412 0.876366 0.570686