Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00542 ATGGCAGATCCTTTTAGCTATGCAAATGCCGACCGTGATATCGAGCAGGCATTAATTGCATTGAAGAAGGGTGCTCAACTACTAAAATATGGTCGTAAAGGAAAGCCGAAGTTCTGTCCATTTAGGCTTTCTAGTGATGAATCTTCCTTGATCTGGATTTCAAGTAAGGGTGAGAGGAGTTTGAAGTTAACTTCAATCTCACGAATTATACCTGGACAAAGAACTGCTGTCTTCGAAAGGTATCTTCGTCCAGAAAAGGATTACTTATCATTCTCTCTTATATACAACAACGGGAAGCGATCCCTTGATCTGATTTGTAAGGATAAAGTTGAGGCAGAGGCTTGGATTTCTGGCCTGAAAGCTTTAATTGCATCTGGTCAAGGTGGGCGTTCCAAAATTGATGGCTGGAGTGATGGAGGCCTCTATCTTGATGAAGGTTGTGAGTTGACTTCAAATAGCCCAAGTGACAGTTCTCACAGCGTGAATAGAGATAACAGCTCTCCAGAATTTTTTGTCAGTTACAACGCAAATATATCTCTGAAGACTTCTCAACCTGAAAATAACATTGCAAAGTTGGAAAGAGCTCATGTATCATTAAACCAAACAAATATGCAAGTAAAGGGATCTAGTTCTGATGTTATGCGAGTTAGTGTTTCAAGTGCTCCCAGCACCTCTAGCCATGGGTCTGCGCCCGATGATTGTGATGCTCTAGGTGATGTATACATATGGGGCGAGATTGTTGGTGACAATATTGTGAAGATTGGGGCTGAAAAAAATAGTAGTTACGTTACCTTGAGGACAGATGTGCTTCTGCCAAGACCTTTGGAGTCTAACATTGTTCTAGACATACATCATATAGCCTGTGGAGTAAGGCATGCTGCGCTAGTGACAAGGCAAGGGGAAGTGTTTACATGGGGTGAGGAATCTGGAGGCCGCCTTGGCCATGGTGTGGTAAAGGATGTAATTCAACCTCGTATGGTTGAATCCTTGGCAGCTAGCAGTATCGTTTTTGTTGCTTGTGGAGAGTTCCATACATGTGCTGTTACAATAACGGGTGAACTTTATACATGGGGTGATGGTACCCACAATGCAGGGCTTCTTGGTCATGGCAGTGATGTTAGCCACTGGATACCAAAGAGAGTCTCTGGTCCGCTTGAAGGACTTCAAGTTACTTCAGTGACATGTGGTCCATGGCATACAGCTCTGGTAACGTCTATGGGTCAGCTTTTTACATTTGGTGATGGAACATTTGGAGCACTGGGCCATGGAGACAGAGAAAATATATCATATCCAAAAGAAGTGGAATCTTTATCAGGCCTGAGGACTATTGCTGTTGCATGTGGGGTGTGGCATACTGCTGCTGTAGTTGAAGTTATTGTGACACAATCTAGTTCGAGCATTTCATCGGGTAAACTGTTTACATGGGGTGATGGAGATAAAAATCGTCTGGGGCATGGAGATAAGGAGCCCAGGCTTAAACCCACATGTGTGCCGGCACTAATTGATTATGATTTCCACAAAGTTGCTTGTGGTCACAGCATCACTGTTGGTTTGACTACTTCAGGGCAAGTTTTCTCAATGGGAAGTACCGTTTATGGACAACTTGGGAATCCCAGTGCAGATGGAAAGATACCTTGCTTGGTAGAGGATAAGCTTTTTGGGGAATCTGTTGAAGAAGTTTCATGTGGTGCATATCATGTGGTGGTATTAACGTCCAAAAATGAAGTTTTTACATGGGGAAAGGGTGCAAATGGGAGATTGGGTCATGGTGATGTTGAAGATCGGAAGACACCAACTTTGGTAGAAGCTTTGAAGGACAGACATGTGAAATATATAGCATGTGGTTCAAATTACACAGCTGCCATTTGTCTTCACAAGTGGGTTTCTAGTGCTGAGCAGTCACAGTGTTCTGCTTGCAGACAGGCATTTGGATTTACACGGAAGAGGCACAACTGTTATAATTGTGGACTTGTGCACTGCCACTCTTGCAGCTCAAGAAAAGCATTAAGAGCAGCTCTTGCTCCTAATCCCGGCAAACTATATCGTGTGTGTGATTCATGTTATACAAAACTGATGAAGGCAGCAGAAGCTATTAATAATAATAGGAAAAATGCTATGCCTCGCCTCTCAGGTGAGAACAAGGATAGGATTGATAAGACTGATATGAAAATATCGAAGTCAGTTCCTTCTAACTTGGATTTGATAAAGCAGTTAGACAACAAAGCGGCTAAACAAGGAAAGAAGGCTGATACCTTCTCCCTTGTTCGATCCTCTCAAGCACCTTCGCTGTTGCAGCTGAGAGATGTTGTATTATCAACTGCTGTTGATCTGCGACGGACAGCTCCCAAACCTGTCCTCACTGCTTCTGGAGTAAGTTCTAGATCCGTGTCGCCTTTCTCAAGGAAACCAAGCCCTCCTCGATCTGCCACACCTGTTCCTACAGCATCAGGACTTTCCTTCTCCAAAAGTATAACTGATAGTTTGAAGAAAACAAATGATCTTTTGAATCACGAAGTGCTTAAATTGCGTTCACAGGTTGAGAGCCTGAGGCAGAAATGTGAACTCCAGGAACAGGAGCTTCAGAAATCTTTGAAGAAAACACGAGAAGCCATGGCCTTGGCTGCCGAGGAATCTGGTAAATCTAAAGCAGCCAAAGAAGTCATCAAGTTACTAACTGCTCAGCTTAAAGATATGGCTGAGAGGTTACCACCTGGAGTGTATGACGCTGAGAAAATGAGATCAGTTCATCTTTCGAATGGTTTGGAGTCAAATGGAGGCTACCATTTGAGTATGAATGGAGAGCGTCATTCACGATCTGATTCAGTTAGCAGCTACTCCTGTGCATCTCCAACGGCATCTGAAGCTGCTGCTTGGCAAGGGAGCTATGGGACAACTCATTCATATAGGGAGCTTTCTGGAACGAATGAAAGTGCTCATCAAGATAGAATTGACAGTCGAGATTCTAGACTTCCAAATAGTGGAGGTGCTCAGCCAGTTAGCAGTAGTGCATCGGTGGCAGCTGTTGGCAAGGATTCTGAGTCCTTACAAGATGGTGACAATAATTCTAAAGCCAAAACTTCTCCACTGGTTAATGCTACTCAAGTTGAGGCTGAATGGATTGAACAATATGAGCCTGGTGTATATATTACTCTTGTGGCTCTGCGGGATGGTACTCGGGATCTAAAACGTGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCATCAAGCAGAAAATTGGTGGTCAGAGAACCGCGAGAAGGTATACGAGAGATATAACGTTCGCAACTCGGACAAGTCTTCAGTTTCGGGACTGACGTCACAAAGAGCAGACGATGCAGTTTCAATAGCTTCCCAGCAACTATAG 3363 43.89 MADPFSYANADRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSSDESSLIWISSKGERSLKLTSISRIIPGQRTAVFERYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEAWISGLKALIASGQGGRSKIDGWSDGGLYLDEGCELTSNSPSDSSHSVNRDNSSPEFFVSYNANISLKTSQPENNIAKLERAHVSLNQTNMQVKGSSSDVMRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEIVGDNIVKIGAEKNSSYVTLRTDVLLPRPLESNIVLDIHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVVKDVIQPRMVESLAASSIVFVACGEFHTCAVTITGELYTWGDGTHNAGLLGHGSDVSHWIPKRVSGPLEGLQVTSVTCGPWHTALVTSMGQLFTFGDGTFGALGHGDRENISYPKEVESLSGLRTIAVACGVWHTAAVVEVIVTQSSSSISSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYDFHKVACGHSITVGLTTSGQVFSMGSTVYGQLGNPSADGKIPCLVEDKLFGESVEEVSCGAYHVVVLTSKNEVFTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYTAAICLHKWVSSAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKLYRVCDSCYTKLMKAAEAINNNRKNAMPRLSGENKDRIDKTDMKISKSVPSNLDLIKQLDNKAAKQGKKADTFSLVRSSQAPSLLQLRDVVLSTAVDLRRTAPKPVLTASGVSSRSVSPFSRKPSPPRSATPVPTASGLSFSKSITDSLKKTNDLLNHEVLKLRSQVESLRQKCELQEQELQKSLKKTREAMALAAEESGKSKAAKEVIKLLTAQLKDMAERLPPGVYDAEKMRSVHLSNGLESNGGYHLSMNGERHSRSDSVSSYSCASPTASEAAAWQGSYGTTHSYRELSGTNESAHQDRIDSRDSRLPNSGGAQPVSSSASVAAVGKDSESLQDGDNNSKAKTSPLVNATQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAENWWSENREKVYERYNVRNSDKSSVSGLTSQRADDAVSIASQQL* 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7619366 7627552 - Chy3G055220.1 Chy03g00542 222703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00542 1120 Pfam FYVE zinc finger 626 692 IPR000306 GO:0046872
Chy03g00542 1120 MobiDBLite consensus disorder prediction 786 803 - -
Chy03g00542 1120 MobiDBLite consensus disorder prediction 972 1029 - -
Chy03g00542 1120 MobiDBLite consensus disorder prediction 990 1009 - -
Chy03g00542 1120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 698 IPR013083 -
Chy03g00542 1120 SUPERFAMILY PH domain-like 13 123 - -
Chy03g00542 1120 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 393 403 IPR000408 -
Chy03g00542 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 300 351 IPR000408 -
Chy03g00542 1120 Coils Coil 832 877 - -
Chy03g00542 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 574 625 IPR000408 -
Chy03g00542 1120 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1099 - -
Chy03g00542 1120 CDD PH_PLC_plant-like 12 124 - -
Chy03g00542 1120 MobiDBLite consensus disorder prediction 926 946 - -
Chy03g00542 1120 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1099 - -
Chy03g00542 1120 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 286 296 IPR000408 -
Chy03g00542 1120 Pfam Transcription factor regulating root and shoot growth via Pin3 1036 1091 IPR013591 -
Chy03g00542 1120 ProSiteProfiles BRX domain profile. 1037 1092 IPR013591 -
Chy03g00542 1120 PRINTS Chromosome condensation regulator RCC1 signature 352 368 IPR000408 -
Chy03g00542 1120 PRINTS Chromosome condensation regulator RCC1 signature 569 590 IPR000408 -
Chy03g00542 1120 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Chy03g00542 1120 PRINTS Chromosome condensation regulator RCC1 signature 393 409 IPR000408 -
Chy03g00542 1120 PRINTS Chromosome condensation regulator RCC1 signature 409 423 IPR000408 -
Chy03g00542 1120 PRINTS Chromosome condensation regulator RCC1 signature 511 529 IPR000408 -
Chy03g00542 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 352 406 IPR000408 -
Chy03g00542 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 407 458 IPR000408 -
Chy03g00542 1120 SUPERFAMILY RCC1/BLIP-II 237 627 IPR009091 -
Chy03g00542 1120 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Chy03g00542 1120 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 445 455 IPR000408 -
Chy03g00542 1120 Pfam Transcription factor BRX N-terminal domain 876 911 IPR027988 -
Chy03g00542 1120 Gene3D - 169 462 IPR009091 -
Chy03g00542 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 470 521 IPR000408 -
Chy03g00542 1120 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 630 692 IPR017455 -
Chy03g00542 1120 Gene3D - 13 129 IPR011993 -
Chy03g00542 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 522 573 IPR000408 -
Chy03g00542 1120 SUPERFAMILY FYVE/PHD zinc finger 626 702 IPR011011 -
Chy03g00542 1120 SMART fyve_4 625 693 IPR000306 GO:0046872
Chy03g00542 1120 MobiDBLite consensus disorder prediction 786 816 - -
Chy03g00542 1120 ProSiteProfiles PH domain profile. 91 124 IPR001849 -
Chy03g00542 1120 Coils Coil 881 901 - -
Chy03g00542 1120 CDD FYVE_like_SF 635 688 - -
Chy03g00542 1120 Gene3D - 463 636 IPR009091 -
Chy03g00542 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 352 402 IPR000408 -
Chy03g00542 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 469 516 IPR000408 -
Chy03g00542 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 521 570 IPR000408 -
Chy03g00542 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 575 622 IPR000408 -
Chy03g00542 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 300 348 IPR000408 -
Chy03g00542 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 407 455 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00542 - - - csv:116404564 2131.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01246 Chy-Chr1:15378814 Chy03g00542 Chy-Chr3:7619366 0 dispersed
Chy03g00542 Chy-Chr3:7619366 Chy04g01411 Chy-Chr4:20774011 0 dispersed
Chy06g02195 Chy-Chr6:26183861 Chy03g00542 Chy-Chr3:7619366 3.09E-14 dispersed
Chy03g00542 Chy-Chr3:7619366 Chy05g00160 Chy-Chr5:1242363 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00542 Chy_Chr03 FPKM 68.918167 76.734024 112.26812 108.705254 58.081459 59.886322 60.283352 94.119347 98.932961 98.868164