Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00543 ATGGAAACCAGGATCTCCGCCGCTCTCGGCCTTCCCTCACCGGATGCCGTTTGTTATCCTTCTCTTTTCGAATTCCCCACTCTATTCTCCAACTTTGATTCATTTTTCGCCGGAAATAAACCCTCCAAAGATCGGAATCACTTCCCTCTTCCGTTTTCTTCATTATCCTTATCCACAGAGGAGCAAGTTTTCACCCCCAAATCCCCCAATTGGGTCAAACCCGTCTCCAAAAGCAACCCAAAAATCCAATCCCTTATGAAGAATTTGTCCGTCCTCGAACGGGCAGTCGTCGGCGCCGCTGGTGGTGCCATGGCCGGCGCCTTTACTTACGTGTGTCTTCTTCCACTTGACACCATTAAAACCAGGCTACAGACAAAAGGGGCTTCAGAGATTTACAAGAACACGTTCGACGCTGTCGTCAAGACCTTTCAATCCAGAGGGATTCTCGGGTTTTACAGCGGCATTTCGGCAGTAATCGTCGGTTCGGCGGCTTCTTCCGCCGTTTATTTTGGAACTTGTGAGTTTGGTAAGTCGATTTTGTCGAAATTTGATTACCCTTCTCTGCTTATTCCTCCAACTGCTGGGGCTATGGGAAATATCATCTCCTCTGCTGTAATGGTGCCGAAGGAATTAATTACTCAGAGAATGCAAGTTGGGGCTAAAGGGAGATCTTGGGAAGTTTTGCTTCAGATTTTAGAGAAAGATGGTATAATGGGTCTTTATGCTGGTTATTTTGCTACATTGCTTAGGAACTTACCTGCTGGGGTTTTGAGTTACTCTTCGTTTGAGTATCTGAAAGCTGCTGTTTTAAGCAAGACGAACAGTGACAAACTTGAACCGATTCAGAGTGTTTGTTGTGGAGCATTGGCAGGTGCTATATCGGCTACACTTACAACACCTCTTGATGTTGTGAAGACAAGGTTGATGACTCAGGTTCATGGGGAGGCTGCAAACAAAGTTTCAGCTGTAATGTACAGTGGGGTGTCGGCTACAATTAAGCAAATATTGCAGGAAGAGGGGTGGATTGGATTAACCCGTGGGATGGGTCCTAGAGTTCTTCACAGTGCTTGCTTTGCTGCAATCGGCTACTTCGCTTTTGAGACTGCGAAACTTGCTATTTTGGATCATTATCTTAGACAGAAGGAGGCTTCAGAATTGGCTTCTGCTTCAACTTGA 1176 46.0 METRISAALGLPSPDAVCYPSLFEFPTLFSNFDSFFAGNKPSKDRNHFPLPFSSLSLSTEEQVFTPKSPNWVKPVSKSNPKIQSLMKNLSVLERAVVGAAGGAMAGAFTYVCLLPLDTIKTRLQTKGASEIYKNTFDAVVKTFQSRGILGFYSGISAVIVGSAASSAVYFGTCEFGKSILSKFDYPSLLIPPTAGAMGNIISSAVMVPKELITQRMQVGAKGRSWEVLLQILEKDGIMGLYAGYFATLLRNLPAGVLSYSSFEYLKAAVLSKTNSDKLEPIQSVCCGALAGAISATLTTPLDVVKTRLMTQVHGEAANKVSAVMYSGVSATIKQILQEEGWIGLTRGMGPRVLHSACFAAIGYFAFETAKLAILDHYLRQKEASELASAST* 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7647164 7648339 + Chy3G055230.1 Chy03g00543 222704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00543 391 PANTHER PROTEIN MITOFERRINLIKE 1, CHLOROPLASTIC 20 387 - -
Chy03g00543 391 Gene3D Mitochondrial carrier domain 222 391 IPR023395 -
Chy03g00543 391 Pfam Mitochondrial carrier protein 99 182 IPR018108 -
Chy03g00543 391 Pfam Mitochondrial carrier protein 193 270 IPR018108 -
Chy03g00543 391 Pfam Mitochondrial carrier protein 278 374 IPR018108 -
Chy03g00543 391 ProSiteProfiles Solute carrier (Solcar) repeat profile. 278 372 IPR018108 -
Chy03g00543 391 SUPERFAMILY Mitochondrial carrier 96 367 IPR023395 -
Chy03g00543 391 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 20 387 - -
Chy03g00543 391 Gene3D Mitochondrial carrier domain 31 221 IPR023395 -
Chy03g00543 391 ProSiteProfiles Solute carrier (Solcar) repeat profile. 186 268 IPR018108 -
Chy03g00543 391 ProSiteProfiles Solute carrier (Solcar) repeat profile. 93 179 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00543 K15111 SLC25A26; solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26 - csv:116404632 729.169
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00543 Chy-Chr3:7647164 Chy09g01229 Chy-Chr9:14371808 2.13E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1243 . . . . . . . . Cmo04g02550 . . . . . Sed11g1334 . . Bhi04g01803 Tan11g1171 Cmetu03g1357 . Hepe02g2779 . Lcy10g1329 Cla08g00676 Cam08g1106 Cec08g0691 Cco08g0800 Clacu08g0812 . Cre08g0616 . . Cone17ag0795 Cone20ag0392 . . . Cme03g01094 Blo17g00218 Blo18g00217 . Bda13g01526 Bpe02g01604 Bpe14g00335 Bma01g00866 Bma02g00276 . . . . . Car04g02347 . Cpe01g02106 . . . . . . . . . . . . . . . Lsi08g00608 . Chy03g00543 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006009 3 1 2 2 2 1 1 1 1 2 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00543 Chy_Chr03 FPKM 15.168215 16.866709 41.397705 41.239525 164.993103 175.570343 161.810806 19.530704 19.944132 20.207857