Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00552 ATGGGGCGTCCAATCGAGACGCTCATTCGACTCGCAGCAGTGAAAATAATAGTCGTCTTATCAGCGGCTTTTGCAGTCGTATCGACCACAACGAACGCAACCGTGACAGTAGCTTCTCAAGCCTTACCCGGGTGCGACGAATGGTGCGGCGACGTGCGGATTCCTTATCCATTCGGGATGAAAGAAGGATGTTATCTAAATAATGAAACATTCTTACTTCAATGTTTTAAAACTAGTCCAAATTCTTCAAGGCCAATTCTAGGCTCCGAAATCATTACAAACATATCCATTATCTCGGGGGAGATTACACTGTCGAGCCTGGTGGCGCAAGAGTGCCACACGCCAGATACTGCTCCCGATACTGTTTCCAATTTCGGTGTTAATGTACCTACCTACACTATTTCCCATACCAAAAACAAGTTCATCGTGATGGGCTGCGATACGATCGCTCTTATTTATGGGGAAGGCGTAGAAGTGCAATCATTTAGATCTGCATGTGTGGCGTTGTGTGATAACATTGGATCGGTAAAAGATGGGGCTTGCTCTGGTAATGGGTGTTGTCAGCTGGACCTTCCTAGTGGGCTTAATTTGATAGATTTCTCGGTCTCCAGTTTAAACAATCACACTAATGTGTCGAGTTTCAATCCTTGTGGGTATGCATTTGTTACAGAACGAGATAGCTTCAACTTCTCTTCAGAGTATATTCTAAATTTTCCTAGAGAAACAATTCCATTAGTGCTTGATTGGGCCATTAGTAATGATACTTGTGTGACGGCTAAGGACAAAACTAATTGTGTTTGTGGCAAAAATAGCACCAAGGTTGACTTACTTGATGATCCATCTAGATATCGTTGCCAGTGCTTGAATGGCTTTGAGGGGAATCCATATCTCCCCGATGGTTGTCAAGATATAGATGAGTGCAAGGACGACAATCTTAATGACTGCAGGTTTGAGTGTGTTAATACAATAGGAAACTATACATGCAATTGCCCAAAAGACTTTAAAGGAGATGGAAGGCGTCAAGGAGATGGTTGCACCCGAAACTCCAAGTCTTTCGTTCAAATCATTGTTGGAGTTACTGTGGGGTTCACAGTTTTAGTAATTGGGAGTGCATGGTTATACTTGGGTTACAAAAAGTGGAAGTTCCTTAAACTGAAGGAGAAGTTTTTTGAGAAAAATGGTGGATTGATGCTTCAACAACATCTTTCTCAATGGCAAGCATCCACTGATATGGTTAGAATTTTCACTCAAGAGGAGTTAGACAAGGCTACAAACAATTTTGAAGGGCCAGAAGCGGAGAGGAACCTAGCCATGTACGTTATGTGTGCAATGAAGGAAGATCGTTTGGAAGAAGTTGTGGAAAAGGGAATAGCGACAAATGCAAACATTCAGCAGATAAAAGAAGCCGCGAAGTTAGCAACAACGTGTTTGAGAATAAAGGGGGAGGAGCGGCCTAGCATGAAGGAGGTGGCTATGGAGTTGGAGGGGCTGAGAGGGTTGAATGAGGCTAATGAGAAATTAGAGAGCAAAGGAGAGACAATGGTAGGTTATTGGGTGCAATCCGATGGATCTTTACAATCATCATCCAACCAGTTTAGTGCGAGTGGAAGCACAAATATTGTGGATGATAGTATGAAGGTTCACATTTTGCCGCTGATCCATAATGGAAGATGA 1674 42.95 MGRPIETLIRLAAVKIIVVLSAAFAVVSTTTNATVTVASQALPGCDEWCGDVRIPYPFGMKEGCYLNNETFLLQCFKTSPNSSRPILGSEIITNISIISGEITLSSLVAQECHTPDTAPDTVSNFGVNVPTYTISHTKNKFIVMGCDTIALIYGEGVEVQSFRSACVALCDNIGSVKDGACSGNGCCQLDLPSGLNLIDFSVSSLNNHTNVSSFNPCGYAFVTERDSFNFSSEYILNFPRETIPLVLDWAISNDTCVTAKDKTNCVCGKNSTKVDLLDDPSRYRCQCLNGFEGNPYLPDGCQDIDECKDDNLNDCRFECVNTIGNYTCNCPKDFKGDGRRQGDGCTRNSKSFVQIIVGVTVGFTVLVIGSAWLYLGYKKWKFLKLKEKFFEKNGGLMLQQHLSQWQASTDMVRIFTQEELDKATNNFEGPEAERNLAMYVMCAMKEDRLEEVVEKGIATNANIQQIKEAAKLATTCLRIKGEERPSMKEVAMELEGLRGLNEANEKLESKGETMVGYWVQSDGSLQSSSNQFSASGSTNIVDDSMKVHILPLIHNGR* 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7833214 7836072 + Chy3G055320.1 Chy03g00552 222713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00552 557 Gene3D Plasmodium vivax P25 domain 246 352 - -
Chy03g00552 557 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 427 501 IPR045274 GO:0007166
Chy03g00552 557 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 428 IPR045274 GO:0007166
Chy03g00552 557 SUPERFAMILY EGF/Laminin 302 338 - -
Chy03g00552 557 SMART egfca_6 303 346 IPR001881 GO:0005509
Chy03g00552 557 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 319 330 IPR000152 -
Chy03g00552 557 ProSitePatterns Calcium-binding EGF-like domain signature. 303 328 IPR018097 GO:0005509
Chy03g00552 557 Gene3D Transferase(Phosphotransferase) domain 1 411 518 - -
Chy03g00552 557 CDD EGF_CA 303 337 - -
Chy03g00552 557 SMART egf_5 306 346 IPR000742 -
Chy03g00552 557 SMART egf_5 255 302 IPR000742 -
Chy03g00552 557 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 427 501 - -
Chy03g00552 557 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 25 428 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00552 - - - csv:101209870 707.983
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00950 Chy-Chr1:9336938 Chy03g00552 Chy-Chr3:7833214 2.35E-53 dispersed
Chy01g00952 Chy-Chr1:9369462 Chy03g00552 Chy-Chr3:7833214 6.96E-18 dispersed
Chy03g00548 Chy-Chr3:7733418 Chy03g00552 Chy-Chr3:7833214 5.97E-165 dispersed
Chy03g00552 Chy-Chr3:7833214 Chy07g00439 Chy-Chr7:3362325 2.52E-108 dispersed
Chy03g00551 Chy-Chr3:7826684 Chy03g00552 Chy-Chr3:7833214 2.23E-51 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g196 . . . . . . . . Cmo04g02519 Cmo15g00654 . . Car01g00906 . . . . Bhi04g01850 . . . . . Lcy10g1281 Cla08g00641 . . . . . . . Cone7ag1498 . . . . . Cme03g00459 Blo17g00163 . . Bda13g01455 Bpe02g01680 . . Bma02g00198 . Cmo01g01069 . . . . . Cpe01g02085 . . . . . . . . . . . . . . . Lsi08g00492 . Chy03g00552 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000104 3 8 3 4 2 5 1 5 5 8 7 5 10 11 3 9 5 3 5 6 7 5 5 3 4 16 0 1 1 10 160
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00552 Chy_Chr03 FPKM 7.478489 7.586464 11.108525 10.973775 27.713362 29.1926 30.509951 19.162384 18.265896 19.246338