Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00554 ATGGGACGTCCAACCTCCAAGAAGCTTGTGCGACTCATCATCGCCATCGTGGTTAACATAGCCATCTTTTCAGCAGCGGCCTCGTCGTCGTCAGTACCTTCTCCAGCCAAACCCCGGTGTAAAAGTAAGTGTGGGGACGTGGAAATTCCATATCCATTCGGGATGAACAAAGAGTGTTTTCTCAACATTAATTTCTCAATCACATGCAACACAAACGATTACAAGTCTGCAAAGCCATTTCTAATGGACAGCAACATTGAAGTAACCAATATATCGCTAAATGGCGAGCTCCACATCTTGAACTACGTAGCTAGAGCTTGTTACACAGAAGATGGTTCTCCTGATATCAACAACAACAGACCCAGTCTTAAGGTCCCCATGTTCACAATTTCCAACACCGAGAACAAGTTCACTGTCATCGGCTGCGATACTTACGCCTATATTTACGGTCAAGTTGACGGGGAATCCTACACAAGTGGGTGCATGGCGTTGTGTGGAAACAGTAGTAGAAGTATAAAAGATGGGTCATGCTCTGGGAGTGGGTGTTGTCAGTTGGAGATTCCTAAAGGCCTAAAACAATTAGAGTTGGATGTTAGAAGCTTCAATAATTATGCTAATCTAACAAATAGCAGCTTGAATCGATGTGGGTATGCTTTTGTAATCCAACAAAACATTTTTAATTTCAACAGAAATTATATCATAAACTACACGGAAGAAAAAGTCCCGCTTGTGCTTGATTGGGGCATAAAACATGAAACTTGTTCAAAAGACAAATGCCTATGTGGACCAAACAGTGAAAAGATACTTCACGATGGATCTGAATATTATCATTGTCTGTGTTCGAATGGTTATCACGGAAATCCTTATCTCGACCAAGGTTGTCAAGATGTAAATGAATGCGATGAAGGATCCCATCAGTGTGTATCCAACGCTAAGTGTGAAAACGCACCACCTGGAAACTATACCTGCTATTGTCCTGAGAAGTATGAAGGAGATGGAACACGTGGGGGAACAGGTTGCAGAAAAAAATATTCCAACTCCAAGTTCATTCAAATTGCCATTGGTGAGGGCCTAGATCGTTTAGCAGAAGTTGTGGATAAGGAAATGGTGATGGATGAAGGAAAGTTGAATCAAATAAAAGAAGTATCAAATATTGCGAAAGAGTGTGTTAGAGTAAGAGGGGAGGAGCGACCCAACATGAAAGAAGTGGCTATGGAGTTAGAGGGACTAAAAGTGATGCAGGTTCAACATTCATGGATTAACAACAATTTATCCAACTCAGAAGAGATGATAAGTTTATTGGATGAAACTTCAAACTCCACCCAATTTCTTGTCAGCAGCCGTATGAATTCTACGAACAATAATACGGAATATCGTGTAGTTTGCTCGTCCATACTTAGTTTTGGAAGTGGTTATCTCTATGTTGTCTGTATTTGGATTCTCCATGATGGGTTTATTTTTCTTAACCCAATTGATTGA 1479 40.77 MGRPTSKKLVRLIIAIVVNIAIFSAAASSSSVPSPAKPRCKSKCGDVEIPYPFGMNKECFLNINFSITCNTNDYKSAKPFLMDSNIEVTNISLNGELHILNYVARACYTEDGSPDINNNRPSLKVPMFTISNTENKFTVIGCDTYAYIYGQVDGESYTSGCMALCGNSSRSIKDGSCSGSGCCQLEIPKGLKQLELDVRSFNNYANLTNSSLNRCGYAFVIQQNIFNFNRNYIINYTEEKVPLVLDWGIKHETCSKDKCLCGPNSEKILHDGSEYYHCLCSNGYHGNPYLDQGCQDVNECDEGSHQCVSNAKCENAPPGNYTCYCPEKYEGDGTRGGTGCRKKYSNSKFIQIAIGEGLDRLAEVVDKEMVMDEGKLNQIKEVSNIAKECVRVRGEERPNMKEVAMELEGLKVMQVQHSWINNNLSNSEEMISLLDETSNSTQFLVSSRMNSTNNNTEYRVVCSSILSFGSGYLYVVCIWILHDGFIFLNPID* 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7866525 7871622 + Chy3G055340.1 Chy03g00554 222715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00554 492 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 358 IPR045274 GO:0007166
Chy03g00554 492 Pfam Wall-associated receptor kinase galacturonan-binding 40 95 IPR025287 GO:0030247
Chy03g00554 492 Pfam EGF domain 300 334 IPR024731 -
Chy03g00554 492 CDD EGF_CA 296 332 - -
Chy03g00554 492 ProSiteProfiles EGF-like domain profile. 296 335 IPR000742 -
Chy03g00554 492 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 359 433 IPR045274 GO:0007166
Chy03g00554 492 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 19 358 - -
Chy03g00554 492 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 359 433 - -
Chy03g00554 492 SUPERFAMILY EGF/Laminin 294 333 - -
Chy03g00554 492 SMART egfca_6 296 341 IPR001881 GO:0005509
Chy03g00554 492 Gene3D Laminin 250 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00554 - - - cmos:111461403 338.961
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00545 Chy-Chr3:7662465 Chy03g00554 Chy-Chr3:7866525 1.62E-109 dispersed
Chy03g00554 Chy-Chr3:7866525 Chy07g00439 Chy-Chr7:3362325 1.64E-65 dispersed
Chy03g00554 Chy-Chr3:7866525 Chy03g00555 Chy-Chr3:7903250 2.19E-118 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g194 . . . . . . . . Cmo04g02520 . Cma01g01027 . . . . . . Bhi04g01849 . . . . . Lcy10g1283 Cla08g00643 . . . . . . . Cone7ag1496 . . . . . Cme03g00456 Blo17g00161 . . . . Bpe14g00403 . Bma02g00195 . . . . . . . . Cpe02g00871 . . . . . . . . . . . . . . Lsi08g00497 . Chy03g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000104 3 8 3 4 2 5 1 5 5 8 7 5 10 11 3 9 5 3 5 6 7 5 5 3 4 16 0 1 1 10 160
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00554 Chy_Chr03 FPKM 5.008055 7.232789 11.073083 10.20743 7.773207 8.877493 8.20125 11.048979 10.676581 9.523623