Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00557 ATGGGCGATATCAACACCAAATTACCACCAAAACCCGATTCCTATTATAAATCTCCAGAACACAACTCCGAAGATTGCATCATTTTCAGAGGCTGGGACAGTGCTGCTGCAATCGACGATGACTCTCAATCCGAATCAGGCGTTTCTTCACCCACCCTTTGGGCTTCCAATTCTCGAACCACCCCCCAATTTCACCACCGCCATCGTAATCGTAGCCTTTCCCCAACTTCCCGAACCCAAGCCATAGCCAGAGGCCAAAAGGAGCTCATGGAGATGGTTCGTAATATGCCAGAATCATCTTACGAGCTCTCCCTCAAAGATCTTGTTGAACATCACTTGACTAATTCGAAGCGCCAACAAGATGGTGATGTTGCTTCGCTTACAAGAGACGACTCCAGCTCTGAAACTTCCTTCCGAAGAGACCCTAGCAAAAACAGAGGTGAAACTAGGGCACTTGTTACCAGAAGTAGAAGCGTCGATAGCGGTGGGTTTTATCTTAAAATGTTCTTCCCACTGCCTTTTGGGCAAGTTTCGGCCAAAAAGAAGAATAATCTTAGAACTGATTCTGGATTGAGTGGTAGCTCGAGAGTTTCGCCTAAGCCACCGCCGGTGGATAAAGATTGGTGGAAGAAGAGATCGTCGGTATCGGGCGGTGAAAACGACGGTAGTATCTCCGGTGGAAGTATGACGAGTAGCGGTAGTAGTAATAGTACTAGCAGCGAAAGAAGCAACAGCAGGAGATCAAGGAGAGAAGAGCTTATAAAGATTCATAGGAATATGTCTACCAATGCTGCTGCTTGCGCTGAGAGAGCCACAAATGATGTGCTTATCGCTCCTGATTGGGCGATAAATATTGAGCTCTGTGATATTATTAACATGGATCCTAGGCAAGCGAAAGATGCATTGAAGATACTCAAGAAGCGTCTCACGAGCAAAAATCCTAAAATACAACTTCTAGCGCTCTATGCATTGGAGGCTCTGAGCAAAAATTGTGGCGATACTGTTTTGAAGCTGATTGTAGATCGTAATATCCTGCATGAAATGGTTAAAATTGTAAAGAAGAAGCAGCCCGACTTAACCGTACGGGAAAAAATATTAGCCTTGGTAGATGCATGGCAAGCAGCATTTGGTGGTGGTTCCAAGGGAAAGTATCCACAGTACTATGCAGCCTACAATGACTTGAAGAATGCTGGATTTCAATTTCCACCAAGAGAAGAGAACGTTGAGCAATTCTTTAGTCCGCCTCAGATACAGCCAGTCATTGAAGACCCTGTTTCAGCTTATGATGATCTTGCTGTTCAGGCTTCTCTCCAGTCTGATTCTTCTGGTTTAAGCTTGCCAGAAATTCAAAATGCACAGGGACTGGGAGATGTTTTATTGGAAATGCTTGGTGCGTTGGACCCCAAGACTCCAGAGGCTTTGAAGCAAGAAGTGATTGGTGATCTTGTTGATCAATGCCGTTCCTACCACAGCCGTGTTGTGATACTTGTGAATGAGACGATAGATGAGGAATTGCTATGTCAAGGATTGGTATTGAATGACAGTCTGCAGCGTGTACTCAGCTACCATGACGACATTGCGAAAGGAACATTTACGTTGGAATCTAGAAGAGCAGAACCTCCTGTTCCATCGGTTCCGTATATCAACCCTGAGGATGATGAGTCCGAAGATGACTCTACACCGTTATCTCGAAGGCCAACGAGGGATCACATTTATGAGAGGGACAGGAAATTGGCAAATGGCCAATCATCTCGAGTAAGTCCACTTCCTTCACCCTCATCGAAGACGACGGCTGTTGTGGAAATGATCGATCATCTTAGTGGTGATGTGTACAAGCCTGCAGGGTCTCCAAGAATAGTAGAGCCACCATCAACTTCTTCGCCTTTCTACACTAGACAACCTTTGTTTGACGAACCACCTCCAAGAAGCATGCCCACTAATCCACTCCTCACAACACCTCGGGATGCTCAATCTCCTAGCGGCCTCCCTCCCCCACCCTCCCGGTATAATCAAAGACAACAATATTTTGAGCAACAAAAAGCTGGTACAGGAGGCAGTCAGCCCCATTTGAGCAACGATTATAGTTCTTATGACAACATGGTGGGGAATACCAAGAATCTTTCACTCAGTCCTACCCCAACCAGATCCGCGGAGCATGAAGAGGCCCTTTTCAAAGATCTGGTGGACTTTGCCAAGGCCAAGTCATCTTCCTCAAAATCCAACCGACCATTCTGA 2235 45.95 MGDINTKLPPKPDSYYKSPEHNSEDCIIFRGWDSAAAIDDDSQSESGVSSPTLWASNSRTTPQFHHRHRNRSLSPTSRTQAIARGQKELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGDVASLTRDDSSSETSFRRDPSKNRGETRALVTRSRSVDSGGFYLKMFFPLPFGQVSAKKKNNLRTDSGLSGSSRVSPKPPPVDKDWWKKRSSVSGGENDGSISGGSMTSSGSSNSTSSERSNSRRSRREELIKIHRNMSTNAAACAERATNDVLIAPDWAINIELCDIINMDPRQAKDALKILKKRLTSKNPKIQLLALYALEALSKNCGDTVLKLIVDRNILHEMVKIVKKKQPDLTVREKILALVDAWQAAFGGGSKGKYPQYYAAYNDLKNAGFQFPPREENVEQFFSPPQIQPVIEDPVSAYDDLAVQASLQSDSSGLSLPEIQNAQGLGDVLLEMLGALDPKTPEALKQEVIGDLVDQCRSYHSRVVILVNETIDEELLCQGLVLNDSLQRVLSYHDDIAKGTFTLESRRAEPPVPSVPYINPEDDESEDDSTPLSRRPTRDHIYERDRKLANGQSSRVSPLPSPSSKTTAVVEMIDHLSGDVYKPAGSPRIVEPPSTSSPFYTRQPLFDEPPPRSMPTNPLLTTPRDAQSPSGLPPPPSRYNQRQQYFEQQKAGTGGSQPHLSNDYSSYDNMVGNTKNLSLSPTPTRSAEHEEALFKDLVDFAKAKSSSSKSNRPF* 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7946180 7953461 - Chy3G055370.1 Chy03g00557 222718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00557 744 Gene3D - 437 532 IPR038425 -
Chy03g00557 744 ProSiteProfiles GAT domain profile. 440 528 IPR004152 GO:0035091|GO:0043130
Chy03g00557 744 MobiDBLite consensus disorder prediction 667 715 - -
Chy03g00557 744 PANTHER TOM1-LIKE PROTEIN 4 260 743 - -
Chy03g00557 744 MobiDBLite consensus disorder prediction 534 597 - -
Chy03g00557 744 SMART VHS_2 264 398 IPR002014 GO:0035091|GO:0043130
Chy03g00557 744 CDD VHS 269 396 - -
Chy03g00557 744 MobiDBLite consensus disorder prediction 558 580 - -
Chy03g00557 744 Pfam GAT domain 457 529 IPR004152 GO:0035091|GO:0043130
Chy03g00557 744 MobiDBLite consensus disorder prediction 114 154 - -
Chy03g00557 744 MobiDBLite consensus disorder prediction 581 597 - -
Chy03g00557 744 MobiDBLite consensus disorder prediction 133 153 - -
Chy03g00557 744 MobiDBLite consensus disorder prediction 185 249 - -
Chy03g00557 744 PANTHER TOM1-LIKE PROTEIN 260 743 IPR044836 GO:0035091|GO:0043130|GO:0043328
Chy03g00557 744 SUPERFAMILY ENTH/VHS domain 267 403 IPR008942 -
Chy03g00557 744 MobiDBLite consensus disorder prediction 1 21 - -
Chy03g00557 744 MobiDBLite consensus disorder prediction 216 242 - -
Chy03g00557 744 MobiDBLite consensus disorder prediction 609 718 - -
Chy03g00557 744 Pfam VHS domain 268 398 IPR002014 GO:0035091|GO:0043130
Chy03g00557 744 MobiDBLite consensus disorder prediction 39 61 - -
Chy03g00557 744 ProSiteProfiles VHS domain profile. 271 402 IPR002014 GO:0035091|GO:0043130
Chy03g00557 744 SUPERFAMILY GAT-like domain 413 529 - -
Chy03g00557 744 MobiDBLite consensus disorder prediction 38 79 - -
Chy03g00557 744 Gene3D - 256 419 IPR008942 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00557 - - - csv:101219096 919.072
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00948 Chy-Chr1:9270743 Chy03g00557 Chy-Chr3:7946180 0 dispersed
Chy03g00557 Chy-Chr3:7946180 Chy04g00142 Chy-Chr4:1277971 2.73E-76 dispersed
Chy03g00557 Chy-Chr3:7946180 Chy03g01237 Chy-Chr3:15455613 6.14E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00557 Chy_Chr03 FPKM 104.820892 115.37381 82.652229 81.555824 73.006439 74.799255 75.184296 81.177155 76.630676 90.769814