Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00560 ATGGGTGTGTCTGCGGCCTCGATACTCAATCGCCTTCTTTCCCGTAAGAACCTGACCGCCAGAATTGAATTCACCGACGCCAATGCTGCCACCAGCACTATCCTCAGATACCTGGAAGAGGGTCGCCTCGGAAAAGCTGTCTTGATCCTGTTCAATTCCCCATTTCCTTTTCCTCATACACTGTACACTCGCCTCTTCCAATTTTGCTCTTCCACTCGCGCGCTTGTTGAAGCTCGAAAGGTCGAGTCTCATTTGGTTACATTTTGCCCCACACCGCCTATTTTCCTCTTGAACCGGGCCATTGAGGCGTATGGTAAATGTGGGTGTTTGAAAGATGCGAGGGAGCTGTTCGATGAAATGCCTCAGAGAGACGGGGGTTCTTGGAATGCGATGATAACAGCGTATACGCAGAATGGGTACGCTTTAGAAGCATTGAATTTATATTTGGATTTGAATAAATCCGGTGTTTATGCTACTGAGGTAACTTTAGCTAGTATCCTTAGATCTTGTGGTTCTGTTTTGGCTCATCACTTTTCGAGGCAAATTCATGGACATATTGTTAAATGTGGCTTTGTTGGCAATGTAATTCTTGAGAGCTCGCTTGTTGATGTCTACGGAAAGTGTAGGCTTATGAATGATGCACGTAGTATGTTTGATGAAATCCAGAATCGAAATGATGTTTCCTGGAATGTAATTGTTAGGCGCTATCTTGAGGTGGGCAATGGGAAAGAGGCAGTTTCAATGTTTTTCCAAATGTTCCGTGAGGCACTGATGCCATCGAGTTTTACTTTTTCCAATGCTCTGATTGCTTGTTCACGTATGGCAGCCCTGATAGAAGGCAGGCAAATTCATGGCATTGTAGTTAAAGTAGGTTTGGAAGAAAATGAGGTTATTTCAAGCTCTTTAATTGACATGTATGTGAAATGTGGGACATTAGCAAATGCTCACCAAGTATTTACCCAACCTAGTTCAAGAAATCTTATTTCTTGGACTTCAATGGTATATGCATATGCAACATCTGGGGATGTTCTAAAAGCAAGGGAGCTTTTCAATGAAATGCCCGAACGCAATGTGATTTCATGGAATGCTATGCTGGCAGGGTATATTCATTCCTCTCAATGGGAGGAGGCATTAGAATTTGTCCACTTGATGCGCGGTTCGATTAAGGATATTGATCGTACAACTCTTTGCTTGATATTAAATGTGTGTACTGGCAGTTCTGATGTTGAAAGAGGAAAGCAAGTTCATGGTTTTGTCTATAGAACTGGTTTCTATGCTAATCTCTATATTGGCAATGCCCTCCTTGATATGTATGGTAAATGCGGGAACTTGAAAAGTGCCAAAGTTTGGTTCTACCAAATGAGTCAATGGCGAGATAAAGTTTCCTGGAATGCTCTGCTCACTGCATATGCTCGTCATGGTATGAGTGAACAGGCTATGACAATTTTTTCAGAGATGCAATTGGAAACAGATCCTAATAATTTTACCTTTGCAACTCTTTTAGGAGCATGTGCAAACATGTTTGCGTTAGAGCATGGTAAACAAATCCATGGCTTCATGGTTAGAAATAATTCTGCGATAGACATCGTACTTACTGGAGCTTTAGTTGATATGTACTGCAAATGCCGGGAACTTAAGTATGCTCTCAAGGTTTTTGAACATGTGGCCTCACGCGATGTGGTTTTGTGGAACTCCATTATCTTAGGATGTTGCCACAACAGAAGGGATATGTTAGCAATCAAACTATTTCAATTAATGACGATGGAGGAAGGCATTAAACCAGACCATGTGACCTTCCAAGGTATTTTGCTCGCTTGTTTGCATGAAAATCTCGTTGAGTTAGGCAGGAAGTATTTCGATTCAATGAGTGAAAAGTTCTGTGTCATACCTCGATTAGAACACTACGAATGCATGGTCGAGCTCTATGGCCAACATGGAAACATGGATGAGCTTGAAAAATTTATCAACAATATGCCCTTTGATCCCACTGTTCCAATGCTGGAAAGAATCTTCAATGCATGTAGAGAACATGGACACTCGAGGTTGGCAGAATGGGTAGCTATACGACTAAATGAGCAAAACTTTCCAAAGTAA 2094 41.79 MGVSAASILNRLLSRKNLTARIEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHTLYTRLFQFCSSTRALVEARKVESHLVTFCPTPPIFLLNRAIEAYGKCGCLKDARELFDEMPQRDGGSWNAMITAYTQNGYALEALNLYLDLNKSGVYATEVTLASILRSCGSVLAHHFSRQIHGHIVKCGFVGNVILESSLVDVYGKCRLMNDARSMFDEIQNRNDVSWNVIVRRYLEVGNGKEAVSMFFQMFREALMPSSFTFSNALIACSRMAALIEGRQIHGIVVKVGLEENEVISSSLIDMYVKCGTLANAHQVFTQPSSRNLISWTSMVYAYATSGDVLKARELFNEMPERNVISWNAMLAGYIHSSQWEEALEFVHLMRGSIKDIDRTTLCLILNVCTGSSDVERGKQVHGFVYRTGFYANLYIGNALLDMYGKCGNLKSAKVWFYQMSQWRDKVSWNALLTAYARHGMSEQAMTIFSEMQLETDPNNFTFATLLGACANMFALEHGKQIHGFMVRNNSAIDIVLTGALVDMYCKCRELKYALKVFEHVASRDVVLWNSIILGCCHNRRDMLAIKLFQLMTMEEGIKPDHVTFQGILLACLHENLVELGRKYFDSMSEKFCVIPRLEHYECMVELYGQHGNMDELEKFINNMPFDPTVPMLERIFNACREHGHSRLAEWVAIRLNEQNFPK* 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8036438 8038531 + Chy3G055400.1 Chy03g00560 222721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00560 697 Gene3D Tetratricopeptide repeat domain 281 416 IPR011990 GO:0005515
Chy03g00560 697 Gene3D Tetratricopeptide repeat domain 177 280 IPR011990 GO:0005515
Chy03g00560 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 473 - -
Chy03g00560 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Chy03g00560 697 Gene3D Tetratricopeptide repeat domain 421 524 IPR011990 GO:0005515
Chy03g00560 697 Pfam PPR repeat family 558 606 IPR002885 -
Chy03g00560 697 Pfam PPR repeat family 459 506 IPR002885 -
Chy03g00560 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 562 694 - -
Chy03g00560 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 473 565 - -
Chy03g00560 697 Pfam PPR repeat 359 386 IPR002885 -
Chy03g00560 697 Pfam PPR repeat 432 455 IPR002885 -
Chy03g00560 697 Pfam PPR repeat 227 254 IPR002885 -
Chy03g00560 697 Pfam PPR repeat 127 156 IPR002885 -
Chy03g00560 697 Pfam PPR repeat 199 225 IPR002885 -
Chy03g00560 697 Pfam PPR repeat 328 358 IPR002885 -
Chy03g00560 697 Pfam PPR repeat 100 123 IPR002885 -
Chy03g00560 697 Pfam PPR repeat 534 554 IPR002885 -
Chy03g00560 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 594 IPR002885 -
Chy03g00560 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 473 565 - -
Chy03g00560 697 Gene3D Tetratricopeptide repeat domain 578 696 IPR011990 GO:0005515
Chy03g00560 697 Gene3D Tetratricopeptide repeat domain 34 176 IPR011990 GO:0005515
Chy03g00560 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Chy03g00560 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 562 694 - -
Chy03g00560 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Chy03g00560 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 489 IPR002885 -
Chy03g00560 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 473 - -
Chy03g00560 697 TIGRFAM PPR: pentatricopeptide repeat domain 561 595 IPR002885 -
Chy03g00560 697 TIGRFAM PPR: pentatricopeptide repeat domain 461 487 IPR002885 -
Chy03g00560 697 TIGRFAM PPR: pentatricopeptide repeat domain 359 385 IPR002885 -
Chy03g00560 697 TIGRFAM PPR: pentatricopeptide repeat domain 328 358 IPR002885 -
Chy03g00560 697 TIGRFAM PPR: pentatricopeptide repeat domain 101 123 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00560 - - - csv:101210115 1393.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00560 Chy-Chr3:8036438 Chy04g02083 Chy-Chr4:26257674 6.18E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g135 . . . . Bpe02g00324 . . Bma01g02099 . . . . . . . . . Bhi04g00091 . . . . . . Cla08g01387 Cam08g1860 Cec08g1439 Cco08g1571 Clacu08g1554 . Cre08g1338 . . . . . . . Cme03g01549 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01277 . Chy03g00560 .
Vvi18g1172 . . . . Bpe02g00620 . . Bma01g02099 . Cmo15g00648 . . . . . . . . . . . . . . Cla08g00647 . . . . . . Cone4ag1444 . . . . . . . . . . . . . . . . . . Cma12g00384 . . Car15g00587 Cpe11g00286 . . . . . . . . . . . . . . . Lsi08g01280 . Chy03g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012345 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00560 Chy_Chr03 FPKM 2.603631 3.862161 6.395215 5.244286 2.296761 2.136874 2.756136 46.133713 43.178776 43.680794