Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00565 ATGGAGACTCCTCTTACTTCGTCTCGTATTATCATTGCTTATGATGCTACTAAAGATCGCACTGAACACGAGCTTCAGCTTACTCTAAGGAACTTGTGGATGAGAGGTGACATCCTTCGTGGAGGCGATACGCTTATTGTGCTTGGAATTCTTCATAAAGTGACTCATCCGATGGGTTACCAATTGAAAGCTTGTCCCGACTCGATTTTTGGAACCAGCGTTCGTGCAATGGAGGAAGAAGTTTCAAAGAAAGCTGATGCATATATCACCATGCTTCAGCGAAGTGCAGAGACGTGTGAAGAAGGAGGGGTCAGCATTGAAGTCAGAATTACTGCCGGTTTCCCCATTAAGAATGTTATTCTACAAGAAATTGTGGTCTTTAGCGCGAGCTGGGTTATACTCGATAGGCATCTTAGACGGGATGAGAGCTTTTACCTTAAACATTTATCTTCCAAGGTTGCTGCAATCCAAGATAACTTGTCTGTTAGAGTTTTGAGAAATAAGACTACAACTGTGGCGAATGAACATAATTTGAGGGATAGCGAACAGTCCATTCTCTCTATCAAAAGCTTCTCATTCCAAAGTAGTTCTCAGGATAGCTCATCTTCACAGAGCAACTGGACCAGTTCTTCTAATAGCATATCTAGAGACCATACATCGGATCCTGAGTCATCTTCTCAGCAAGAAAAAATAGGTACAGATTCCAGAGAACAGAAAGTTTATGCAACTGCTTCTCAGACTGTTCAACTTCCAAATAAGGACATGTTTCAACAAATATCTTCAGAAGCACCAATTTTATGCTCTGTTTGTGGAATGAGGTCTGATTTGCATATGAAGAATACCATGAGGTTTAGCTTTTCTGAAATTCAGCAAGCCACTTCCGATTTCTCCGCAGCAAACTTGTTGGGAGAAGGCGGTTATGGCCATGTTTTTAAGGGTGAACTAAAAAATGGACAACTCATTGCTACAAAAGTGCGAAAAGAAGAAAGTAGCCAAGGATTTATAGAATTTCATTCCGAGATACAAGTTTTGAGTTTTGCTCGTCACAAGAACATAGTGATGTTGTTGGGTTATAGTTGCAAGGAAAACTTAAATGTTCTGGTCTATGAATATATTTGCAACAGGTCTCTTGATTTTCACTTATTTTGTAAGACGACAACAGTTCTCGAACTACATCAAAGATATGGCATTGCTGTTGGAATTGCTAAGGGACTGCGTTTTCTTCATGAAGAATGTCGTGGAGGTCCTGTAATACACAGAGATGTCCGTCCAAGTAACATATTGCTCACACATGATTTTGTTCCTATGTTGGGTGATTTTGGCTTGGCCAAATGGAGGACAAAAGATGAAACATCGCATTCAAGGATACTCGGCACATTTGGATATGTTGCACCCGAATATGCGGAAAATGGTATTCTTTCAGTAAGAACAGATGTATATGGATTTGGAATTGTATTGCTACAATTGATATCTGGTCGCAAGGTGTTTGACGCTAAAGATGATATACAAGGACAATCTCTGCGAGAATGGGCTGAACCACTAATTGAGAACTTAGCATTACATGAACTGATTGATGCTCGAGTTGCAAAGACATATGACACATATGAATTGTATCTCATGGCCAGAACTGCATACTTATGCATCCAAATAAGCCCTGAGAACCGTCCATCAATGGGAGAGGTTGTGCGCCTTCTTGAAGGGGAAAATGATCATTATCACTATCTGGGAGAGAAGTTGATACCTCGTTATAACAAATAA 1758 40.27 METPLTSSRIIIAYDATKDRTEHELQLTLRNLWMRGDILRGGDTLIVLGILHKVTHPMGYQLKACPDSIFGTSVRAMEEEVSKKADAYITMLQRSAETCEEGGVSIEVRITAGFPIKNVILQEIVVFSASWVILDRHLRRDESFYLKHLSSKVAAIQDNLSVRVLRNKTTTVANEHNLRDSEQSILSIKSFSFQSSSQDSSSSQSNWTSSSNSISRDHTSDPESSSQQEKIGTDSREQKVYATASQTVQLPNKDMFQQISSEAPILCSVCGMRSDLHMKNTMRFSFSEIQQATSDFSAANLLGEGGYGHVFKGELKNGQLIATKVRKEESSQGFIEFHSEIQVLSFARHKNIVMLLGYSCKENLNVLVYEYICNRSLDFHLFCKTTTVLELHQRYGIAVGIAKGLRFLHEECRGGPVIHRDVRPSNILLTHDFVPMLGDFGLAKWRTKDETSHSRILGTFGYVAPEYAENGILSVRTDVYGFGIVLLQLISGRKVFDAKDDIQGQSLREWAEPLIENLALHELIDARVAKTYDTYELYLMARTAYLCIQISPENRPSMGEVVRLLEGENDHYHYLGEKLIPRYNK* 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8099580 8106825 + Chy3G055450.1 Chy03g00565 222726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00565 585 SUPERFAMILY Protein kinase-like (PK-like) 280 568 IPR011009 -
Chy03g00565 585 PANTHER OS01G0253100 PROTEIN 8 577 IPR045271 GO:0004714|GO:0006468
Chy03g00565 585 ProSiteProfiles Protein kinase domain profile. 296 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g00565 585 Gene3D Transferase(Phosphotransferase) domain 1 373 577 - -
Chy03g00565 585 MobiDBLite consensus disorder prediction 195 240 - -
Chy03g00565 585 Pfam Protein kinase domain 299 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g00565 585 SMART tyrkin_6 296 565 IPR020635 GO:0004713|GO:0006468
Chy03g00565 585 Gene3D Phosphorylase Kinase; domain 1 270 371 - -
Chy03g00565 585 MobiDBLite consensus disorder prediction 195 229 - -
Chy03g00565 585 PANTHER RECEPTOR-LIKE KINASE 8 577 - -
Chy03g00565 585 ProSitePatterns Tyrosine protein kinases specific active-site signature. 417 429 IPR008266 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00565 - - - mcha:111011855 978.393
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00565 Chy-Chr3:8099580 Chy04g00641 Chy-Chr4:7348350 1.95E-105 dispersed
Chy03g00565 Chy-Chr3:8099580 Chy03g00567 Chy-Chr3:8113226 1.01E-08 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1175 . . . . . . . . Cmo04g02526 . . . Car01g01585 . . . . . . . . . . . Cla08g00648 . . . . . . Cone4ag1445 Cone7ag1489 . . Lsi04g01809 . . Cme03g00434 . . . Bda01g01381 Bpe02g01594 . . . . . . . . . . Cpe01g02090 . . . . . . . . . . . . . . . . . Chy03g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011525 0 0 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 2 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71127 PF00069 Pkinase 2.10E-37 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00565 Chy_Chr03 FPKM 19.720537 22.423775 26.483877 21.929605 3.179532 2.934247 1.629551 8.301885 7.526058 9.563095