Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00571 ATGGTGAACGATACTGAGTATTATGACATTCTTGGTGTTCATCCTTCTGCTTCTGAGGAGGAGATTCGTAAGGCTTATTATCATAAGGCGAAACAAGTCCATCCGGATAAAAATTTGAATGATCCTCAAGCTGCTGAAAGGTTTCAGGCTTTGGGTGAAGCTTATCAAGTGTTGAGTGACGCAGTCCAAAGAAATGCCTATGATAGGAATGGGAAGCATAGTGTTACTAGGGAATCCATGCTTGACCCTACTGCCGTTTTTGCACTTTTATTTGGAAGTGAATTATTTGAGAACTACATTGGGCATTTAGCTGTAGCATCAATGGCCTCATCTGAATTAGAAAGCGAATCTGGCAATCCAGAGAGATTACATGATAAGTTGAAGGCTGTCCAGAAAGAAAGAGAAGAAAAACTTGCACGTATACTTGAGGGTTTTCTTAATCAATATGTTCAAGGTGATAAAGACGGATTCTTACGGCATGCTGAATCTGAAGCTAAAAGACTTTCTGATGCAGCTTTTGGCGTTAATATATTGCACACTATAGGCTACATTTATTCCAGACAAGCAGCACAAGAGCTTGGAAAGAGAGCCATTTATCTCGGAGTGCCATTTGTGGCCGAATGGTTTCGCAACAAGGGACATTTTTGGAAGTCACAAATAACAGCTGCAAAAGGTGCATTTCAGTTGTTACAACTTCAAGATGATATTAGCAGGCAATTTAAAATGGATGGTAGTGGCCCTGGATCTGATATTGAATCGCATATTCAAGCGAATAAAGACACATTCCTCAATTCTTTGTGGAGGCTTAACGTGGTTGACATTGAACTGACTCTTATAAATGTGTGCCAAATGGTGCTACGGGATAATACTGTTAGAAAGGAAGATCTAAAAGCTCGCGCTCTGGCTCTGAAGGTTCTTGGAAAGATATTCCAGCAAGAGAAGCAGGCGCAAGATAGTGGTACGTCAAGAAAGAAAGGTGACGCTGCAGTAGATGACGAAGGAACGAGTTCAGAGAGCAGCGATGATGAGGATGATCCCCGAAGACCACTGTCGTATCGAACTCCTTTTCTTACTCAGGCAAGTACATCAACTCTCTTCTCTTTCCATTCAAAAGGGGATCCACTTTATCTCAAGTATGTTGAAACTTGCACGGAAAAGTTTTTGCTAATATAA 1173 41.09 MVNDTEYYDILGVHPSASEEEIRKAYYHKAKQVHPDKNLNDPQAAERFQALGEAYQVLSDAVQRNAYDRNGKHSVTRESMLDPTAVFALLFGSELFENYIGHLAVASMASSELESESGNPERLHDKLKAVQKEREEKLARILEGFLNQYVQGDKDGFLRHAESEAKRLSDAAFGVNILHTIGYIYSRQAAQELGKRAIYLGVPFVAEWFRNKGHFWKSQITAAKGAFQLLQLQDDISRQFKMDGSGPGSDIESHIQANKDTFLNSLWRLNVVDIELTLINVCQMVLRDNTVRKEDLKARALALKVLGKIFQQEKQAQDSGTSRKKGDAAVDDEGTSSESSDDEDDPRRPLSYRTPFLTQASTSTLFSFHSKGDPLYLKYVETCTEKFLLI* 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8141145 8144090 - Chy3G055510.1 Chy03g00571 222732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00571 390 MobiDBLite consensus disorder prediction 318 332 - -
Chy03g00571 390 CDD DnaJ 6 60 IPR001623 -
Chy03g00571 390 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Chy03g00571 390 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Chy03g00571 390 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 370 - -
Chy03g00571 390 MobiDBLite consensus disorder prediction 316 353 - -
Chy03g00571 390 Pfam X-domain of DnaJ-containing 131 321 IPR026894 -
Chy03g00571 390 Pfam DnaJ domain 6 68 IPR001623 -
Chy03g00571 390 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 370 - -
Chy03g00571 390 SMART dnaj_3 5 63 IPR001623 -
Chy03g00571 390 Gene3D DnaJ domain 1 86 IPR036869 -
Chy03g00571 390 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Chy03g00571 390 PRINTS DnaJ domain signature 43 63 IPR001623 -
Chy03g00571 390 PRINTS DnaJ domain signature 8 26 IPR001623 -
Chy03g00571 390 PRINTS DnaJ domain signature 63 82 IPR001623 -
Chy03g00571 390 PRINTS DnaJ domain signature 26 41 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00571 - - - csv:101219818 685.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00571 Chy-Chr3:8141145 Chy07g00444 Chy-Chr7:3402014 9.30E-149 dispersed
Chy03g00571 Chy-Chr3:8141145 Chy03g01336 Chy-Chr3:16323090 1.87E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1178 . Blo12g00834 . Bda03g00342 . Bpe04g00302 . . Cmo04g02530 Cmo15g00644 . . . . . . Cpe13g00655 Bhi04g01834 . . . . . . . . . . . . . . . Cone17ag0805 Cone20ag0410 . . . Cme03g00430 . Blo18g00226 . Bda01g01383 Bpe02g01596 . Bma01g00878 . . . . . . Car04g02328 Car15g00585 Cpe01g02091 . . . . . . . . . . . . . . . . . Chy03g00571 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00571 Chy_Chr03 FPKM 16.607143 18.786644 33.249844 29.879137 71.877098 71.484665 70.240685 37.302162 40.374336 39.3801