Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00572 ATGTCCTCCAGGGATTCTAACGTCCTCTTCAGTGGTGGCGGTATCAGTTTTCTCAATGAAAATCACACTGGAAAGTTCAGCTATGGATATTCTAGTTTCAAGGGCAAAAGAGCTTCGATGGAGGACTTCTATGAAACAAGAATTTCTGAAGTTGATGGGCAGATGGTCGCTTTTTTTGGTGTTTTTGATGGTCATGGAGGTTCCAGAACAGCTGAATACCTTAAGCGCAATCTTTTCAAGAACCTAAGTAACCATCCAGACTTTATCAAAGATACAAAGACTGCTATTATTGAGGTCTTTAAGCAGACCGATGCCGATTATATCAACGAAGAGAAAGGGCAGCAGAAAGATGCTGGGTCAACTGCATCAACTGCTGTCCTGTTCGGGGATCGTCTCCTTGTTGCAAATGTTGGAGATTCCAGAGTAGTTGCATCTAGAGCTGGTTCAGCTATTCCCCTCTCTATTGATCACAAACCTGATAGGTCAGATGAGCGCCAACGGATTGAACAAGCTGGAGGATTCATTCTTTGGGCAGGAACTTGGCGGGTTGGTGGTATTCTAGCAGTTTCACGTGCCTTCGGAGATAAGCTACTCAAACCGTATGTTGTTGCTGATCCCGAAATTAAGGAAGAAGAACTTGAAGGCGTAGATTTTATTATTATTGCAAGCGATGGACTTTGGAATGTCATATCAAACGAGGAAGCTGTAGCATTGGTACAACACAATCAAGATGCAGAAATGGCATCAAGACAACTAATCCAAGAAGCTTTTGCTCGAGGGAGTTCAGACAACATTACATGTGTCATTGTACGGTTTGGTTTGTCGTAA 828 43.0 MSSRDSNVLFSGGGISFLNENHTGKFSYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDGHGGSRTAEYLKRNLFKNLSNHPDFIKDTKTAIIEVFKQTDADYINEEKGQQKDAGSTASTAVLFGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEQAGGFILWAGTWRVGGILAVSRAFGDKLLKPYVVADPEIKEEELEGVDFIIIASDGLWNVISNEEAVALVQHNQDAEMASRQLIQEAFARGSSDNITCVIVRFGLS* 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8152002 8156010 - Chy3G055520.1 Chy03g00572 222733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00572 275 CDD PP2Cc 26 272 IPR001932 -
Chy03g00572 275 Pfam Protein phosphatase 2C 28 265 IPR001932 -
Chy03g00572 275 PANTHER ALPHABET, ISOFORM E-RELATED 4 274 - -
Chy03g00572 275 Gene3D - 18 274 IPR036457 -
Chy03g00572 275 SUPERFAMILY PP2C-like 24 273 IPR036457 -
Chy03g00572 275 ProSiteProfiles PPM-type phosphatase domain profile. 27 272 IPR001932 -
Chy03g00572 275 SMART PP2C_4 17 270 IPR001932 -
Chy03g00572 275 PANTHER PROTEIN PHOSPHATASE 2C 11-RELATED 4 274 - -
Chy03g00572 275 ProSitePatterns PPM-type phosphatase domain signature. 58 66 IPR000222 GO:0043169
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00572 Chy-Chr3:8152002 Chy07g00305 Chy-Chr7:2510023 1.81E-129 dispersed
Chy12g00232 Chy-Chr12:2656877 Chy03g00572 Chy-Chr3:8152002 4.94E-46 dispersed
Chy03g00572 Chy-Chr3:8152002 Chy04g00256 Chy-Chr4:2272719 1.76E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00572 K17506 - csv:101220053 538.495