Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00585 ATGAACTCTACTTCAGATGATTGCTTTAGTGGCATTAATCCCGAAAAGCTTATCATCGCTTTAGAGCTATGCGATTTCATAGTTGACAATGTAGCTGATATACCTGATGAAGATGATAATAGAAGGATGCATCGCCGCCCATTGCTACCACGAGAGGATGAACAAGAGGACGTTGAAGCACTTGAAAGAAGGATTCAAGCAAGATATGCAAGGTCAAATCATATGGAATATGACGAGGAGACGACAGAGGTTGAGCAGCAAGCTCTTTTACCTTCTGTAAGGGATCCAAAATTGTGGATGGTTAAATGCGCGATTGGCCGTGAGCGGGAGGCTGCTGTTTGTCTAATGCAAAAATGCATTGATAGGGGCCCTGAAATGCAAATAAGATCTGCAGTAGCCCTCGACCATTTGAAGAACTTTATATATATTGAAGCCGACAAAGAAGCCCATGTTAGAGAGGCTTGTAAAGGTCTACGCAATATATATGCTCAGAAAATTACGCTTGTTCCAATTAAAGAGATGACTGACGTTCTCTCTGTTGAAAGCAAAGCAATTGATCTTTCTAGAGATACATGGGTTAGGATGAAGATTGGGACATATAAGGGGGATCTTGCCAAGGTGGTGGATGTTGATAATGTGCGGCAGAGGGTTACTGTGAAACTGATTCCACGGATAGACTTACAGGCTCTTGCTAATAAATTGGAAGGGAGAGAAGTTGCTAAGAAGAAGGCATTTGTTCCTCCTCCTCGTTTTATGAATATTGATGAAGCTAGAGAATTACATATACGCGTAGAGCGTAGACGCGATCCCATTACTGGAGAATACTTTGAGAATATTGGCGGCATGTTTTTCAAGGATGGTTTCTTGTATAAAACAGTGTCCATGAAGTCAATAAGTGCTCAAAATATAAAGCCGACTTTTGATGAACTTGAAAAATTTCGAAAGCCTGGAGAAAATGGAGATGGAGATATTGCTAGTTTGTCTACCTTGTTTGCAAACCGAAAGAAAGGGCACTTTATGAAGGGTGATGCTGTCATTGTTGTTAAGGGGGATCTCAAGAATTTGAAAGGATGGGTTGAGAAAGTAGAGGAAGAAAATGTCCACATCAGACCAGAAATGAAGGGCCTTCCTAAAACACTTGCTGTGAATGAAAGAGAACTTTGCAAGTACTTTGAGCCTGGGAATCATGTAAAAGTTGTATCGGGCACTCAGGAAGGGGCAACTGGTATGGTTGTGAAGGTGGACCAGCACGTGCTTATTATACTATCTGATACAACCAAGGAACATATTCGGGTATTTGCTGATGATGTTGTTGAGAGTTCTGAGGTTACAACTGGTGTGACGAGAATTGGGGATTATGAACTTCATGATCTAGTGTTATTGGATAATATGAGCTTTGGTGTAATTATTCGTGTAGAAACGGAGGCTTTTCAGGTTCTTAAAGGTACTCCTGATAGGCCTGAGGTTGATATTGTGAAATTGAGGGAAATAAAAAGCAAGATCGACAAGAAAATCAGCGTTCAAGATCGATTTAATAATACAATATCCTCCAAGGATGTAGTGAGGATCCTTGAAGGTCCTTGTAAGGGAAAACAAGGTCCTGTGGAGCACATATACAGAGGAATCCTGTTTATTTATGATCGCCATCACTTGGAACATGCAGGCTTTATATGTGCTAAATCACAATCTTGTGTTGTTGTGGGTGGATCCCGAACTAATGGAAATAGAAATGGTAATTCATACTCTAGGTTTGCCGGCATTGCGACCCCACCTCGTTTTCCTCAGTCTCCTAAGAGATTTTCCAGAGGAGGTCCCCCCAATGATAGTGGGGGAAGACATAGAGGTGGGAGAGGGCATCATGATGGGTTGGTTGGATCAACAGTAAAAGTTCGACAGGGACCTTATAAGGGTTACCGTGGGCGTGTTGTTGAAATAAAAGGCCAACTGGTTCGTGTGGAGCTTGAATCTCAAATGAAAGTTGTCACAGTTGACCGCAATTTTATCTCGGATAATGTGGCCATTTCAACCCCCCATCGTGATGCATCTAGATATGGTATGGGAAGTGAAACTCCAATGCATCCTTCTCGAACTCCCCTGCATCCGTACATGACGCCAATCAGAGATATTGGAACAACACCAATTCATGATGGCATGAGAACACCTATGCCAGATCGAGCTTGGAATCCCTATGCACCTATGAGTCCGTCAAGGGATAACTGGGAGGAAGGGAATCCTGCAACTTGGGGAGCGAGTCCACAGTACCAGCCAGGAAGTCCTCCTTCACGAACATACGAAGCTCCAACTCCTGGTTCTGGTTGGGCAAATACTCCTGGTGGCAGTTACAGTGATGCCGGTACCCCCCGTGATAGTGGTTCAGCCTATGCAAATGCTCCGAGTCCATACTTGCCTTCAACCCCTGGTGGACAGCCCATGACACCAAATTCAGCCTCCTATCTTCCAGGCACTCCCGGCGGGCAACCAATGACACCAGGCACAGGTGGTCTGGATATGATGTCTCCTGTTATAGGTGGTGATACCGAAGGGCCATGGTACATGCCAGACATATTAGTCAATTACCGTAGGTCAGGTGATGATCCCATCATGGGAGTAATTCGTGAGGTGCTTCCGGATGGCTCGTGTAGGATAGGGCTTGGGTCAAGTGGAAATGGTGAAACGGTAACAGCCCCTTCTAGTGAAGTAGAAGTGATTGTTCCTAGGAAGTCGGACAAGATAAAGATAATGGGTGGTGCACTGCGTGGTGCCACTGGCAAGTTGATCGGTGTAGACGGTACCGACGGAATTGTGAAGGTAGACGACACTCTTGATGTTAAGATTTTGGATTTAGTTATTCTTGCTAAACTTGCTCAACCATAA 2874 44.15 MNSTSDDCFSGINPEKLIIALELCDFIVDNVADIPDEDDNRRMHRRPLLPREDEQEDVEALERRIQARYARSNHMEYDEETTEVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDRGPEMQIRSAVALDHLKNFIYIEADKEAHVREACKGLRNIYAQKITLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKAFVPPPRFMNIDEARELHIRVERRRDPITGEYFENIGGMFFKDGFLYKTVSMKSISAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKYFEPGNHVKVVSGTQEGATGMVVKVDQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELHDLVLLDNMSFGVIIRVETEAFQVLKGTPDRPEVDIVKLREIKSKIDKKISVQDRFNNTISSKDVVRILEGPCKGKQGPVEHIYRGILFIYDRHHLEHAGFICAKSQSCVVVGGSRTNGNRNGNSYSRFAGIATPPRFPQSPKRFSRGGPPNDSGGRHRGGRGHHDGLVGSTVKVRQGPYKGYRGRVVEIKGQLVRVELESQMKVVTVDRNFISDNVAISTPHRDASRYGMGSETPMHPSRTPLHPYMTPIRDIGTTPIHDGMRTPMPDRAWNPYAPMSPSRDNWEEGNPATWGASPQYQPGSPPSRTYEAPTPGSGWANTPGGSYSDAGTPRDSGSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVIGGDTEGPWYMPDILVNYRRSGDDPIMGVIREVLPDGSCRIGLGSSGNGETVTAPSSEVEVIVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP* 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8386255 8394879 + Chy3G055650.1 Chy03g00585 222746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00585 957 CDD KOW_Spt5_4 518 560 IPR041977 -
Chy03g00585 957 ProSitePatterns Ribosomal protein L24 signature. 342 359 IPR005825 GO:0003735|GO:0005840|GO:0006412
Chy03g00585 957 CDD KOW_Spt5_1 190 227 IPR041973 -
Chy03g00585 957 Gene3D - 393 442 IPR014722 -
Chy03g00585 957 SMART nusgn_4 95 181 IPR006645 GO:0140673
Chy03g00585 957 Pfam Spt5 transcription elongation factor, acidic N-terminal 25 91 IPR022581 -
Chy03g00585 957 SMART kow_9 514 541 IPR005824 -
Chy03g00585 957 SMART kow_9 186 213 IPR005824 -
Chy03g00585 957 SMART kow_9 338 365 IPR005824 -
Chy03g00585 957 SMART kow_9 904 931 IPR005824 -
Chy03g00585 957 SMART kow_9 621 648 IPR005824 -
Chy03g00585 957 SMART kow_9 390 417 IPR005824 -
Chy03g00585 957 Pfam Early transcription elongation factor of RNA pol II, NGN section 97 178 IPR005100 -
Chy03g00585 957 MobiDBLite consensus disorder prediction 577 625 - -
Chy03g00585 957 Gene3D - 77 179 IPR036735 GO:0006355
Chy03g00585 957 Coils Coil 51 71 - -
Chy03g00585 957 CDD KOW_Spt5_5 621 669 IPR041978 -
Chy03g00585 957 Pfam KOW motif 393 420 IPR005824 -
Chy03g00585 957 Pfam KOW motif 624 654 IPR005824 -
Chy03g00585 957 SUPERFAMILY Translation proteins SH3-like domain 382 441 IPR008991 -
Chy03g00585 957 CDD KOW_Spt5_3 390 440 IPR041976 -
Chy03g00585 957 Gene3D - 607 671 IPR014722 -
Chy03g00585 957 PIRSF Spt5 21 957 IPR017071 GO:0006357|GO:0032784
Chy03g00585 957 Gene3D - 186 228 IPR014722 -
Chy03g00585 957 PANTHER SUPPRESSOR OF TY 5 29 955 IPR039659 GO:0006357|GO:0032784
Chy03g00585 957 CDD NGN_Euk 97 179 IPR039385 -
Chy03g00585 957 MobiDBLite consensus disorder prediction 36 55 - -
Chy03g00585 957 MobiDBLite consensus disorder prediction 808 822 - -
Chy03g00585 957 CDD KOW_Spt5_6 898 955 IPR041980 -
Chy03g00585 957 MobiDBLite consensus disorder prediction 746 799 - -
Chy03g00585 957 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 29 955 - -
Chy03g00585 957 CDD KOW_Spt5_2 339 389 IPR041975 -
Chy03g00585 957 MobiDBLite consensus disorder prediction 678 832 - -
Chy03g00585 957 Gene3D - 333 390 IPR014722 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00585 K15172 SUPT5H, SPT5; transcription elongation factor SPT5 - csv:101204562 1844.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1207 Blo01g01326 . Bda01g00691 . Bpe02g00614 . . Bma01g02111 Cmo04g02539 Cmo15g00634 . . . . Sed01g2883 . Cpe13g00663 Bhi04g01823 Tan11g1195 Cmetu03g0776 . Hepe02g2759 . Lcy10g1309 Cla08g00661 Cam08g1091 Cec08g0676 Cco08g0785 Clacu08g0796 . Cre08g0599 . . . . . . . Cme03g00404 . . . . . . . . . . . . . Car04g02336 Car15g00576 Cpe01g02098 . . . . . . . . . . . . . . . Lsi08g00519 . Chy03g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005509 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00585 Chy_Chr03 FPKM 1.484681 1.729239 3.290674 3.135885 6.98889 5.493249 6.816241 7.411123 7.100992 7.183956