Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00590 ATGGTTGAAGTCCACGCTTTTTGCTTGATGGGATGGAGGAGGGTGTTCTTCTACACACTGTTCATTCTCTTCAAAATGGTTGAATCCTCCAGTAGATCAGGGAAGATGTGGTTATTGAATTTAAGCAGCGAAGCAGCACCTAAGTTCAGCTGGACAATTCTCAGTGCTGGTGTATTCGTATTTGCTGCACTTGTTCTTTCCACGTTTCTCATCATCGAACATTTAGCTTCTTATAATCAACCAGAGGAACAGAAGTTTTTGATTGGTCTTATATTGATGGTTCCTGTTTACTCTCTAGAATCGTTCCTGTCATTGTTAAATTCAAATGGTGCATTTAACTGGGAAGTGATACGGGACTGCTACGAGGCATTTGCATTATATTGCTTTGAAAGATACCTTATTGCTTGCTTGGGTGGTGAGAAACGCACAGTTGAATTCATGGAAAGTCAGACTGTTGTTGACTCTAGCACACCGCTTTTGGCAGAAAAATATGCATATGGGGTTGTAGAACACCCCTTTCCCTTAAATTGCTTCATAAGGGAATGGTATCTTGGTTCTGACTTCTATCATGCTGTGAAAATCGGTATTGTTCAATATATGATATTGAAGATGATATGTGCGCTCCTAGCTATGATTCTTGAAAGTTTCGGGGTCTATGGAGAAGGAAAGTTCGAGTGGAGATATGGTTATCCCTATTTGGCGGTTGTACTTAATTTTAGTCAATCGTGGGCCTTATATTGCCTTCTCCAATTCTATTCTGTCACAAAGGACAAATTGGAATCGATTAAACCATTGGCAAAGTTTCTTGTAGTCAAGTCAATAGTTTTCCTCACCTGGTGGCAAGGTGTTGCTGTTGCCTTTCTTTTCTCAATAGGAGCTTTCAAAGGGTCACTGGCTCGGGAGCTAAAGACACGCATACAAGATTACCTGATATGTATTGAGATGGGTATTGCTGCCGTCGCACATGTTTATACCTTTCCAGCAGTACCTTATAAGCGAGGAGAAAGATGTGTCCGTAATGTTTCGGTGCTGTCTGACTATGCATCACTAGGAACGCCACCTGATCCGGAGGAGGTTCAAGACTCTGAACGGACAACTAAAATACGCTTGGGTCGCCATGATGAGCGAGAGAAACGTTTGAATTTTCCTCAGAGTGTTCGAGATGTTGTCATTGGAAGCGGTGAAATTATTGTTGATGACATGAAGTATACAGTCACACACGTAGTGGAACCAGTTGAAAGGGGAATTGCAAAACTTAATAAAACGATCCATCGGTTCTCTGAAAACGTTAAACGGCATGAAGAGCAACGGAAGAGTGCCAAGGATGATAGCCATCTGATTCCTCTGAATTCTTGGTCAAAAGAATTTTCCGAAGTTGAAGAAAATCTTACTCAAGGCAGTGTAAGTGACAGTGGAATCACCAATGGTAAGAGACAACATTCTCAATCAAAAGCCACTTCTCGAATTAGATTTGGCAGATAA 1482 41.36 MVEVHAFCLMGWRRVFFYTLFILFKMVESSSRSGKMWLLNLSSEAAPKFSWTILSAGVFVFAALVLSTFLIIEHLASYNQPEEQKFLIGLILMVPVYSLESFLSLLNSNGAFNWEVIRDCYEAFALYCFERYLIACLGGEKRTVEFMESQTVVDSSTPLLAEKYAYGVVEHPFPLNCFIREWYLGSDFYHAVKIGIVQYMILKMICALLAMILESFGVYGEGKFEWRYGYPYLAVVLNFSQSWALYCLLQFYSVTKDKLESIKPLAKFLVVKSIVFLTWWQGVAVAFLFSIGAFKGSLARELKTRIQDYLICIEMGIAAVAHVYTFPAVPYKRGERCVRNVSVLSDYASLGTPPDPEEVQDSERTTKIRLGRHDEREKRLNFPQSVRDVVIGSGEIIVDDMKYTVTHVVEPVERGIAKLNKTIHRFSENVKRHEEQRKSAKDDSHLIPLNSWSKEFSEVEENLTQGSVSDSGITNGKRQHSQSKATSRIRFGR* 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8446379 8452231 + Chy3G055700.1 Chy03g00590 222751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00590 493 MobiDBLite consensus disorder prediction 463 493 - -
Chy03g00590 493 PANTHER ORGANIC SOLUTE TRANSPORTER SUBUNIT ALPHA-RELATED 23 481 - -
Chy03g00590 493 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 23 481 IPR005178 -
Chy03g00590 493 Pfam Organic solute transporter Ostalpha 53 331 IPR005178 -
Chy03g00590 493 Coils Coil 416 443 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00590 - - - csv:101203343 954.896
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00604 Chy-Chr1:4303522 Chy03g00590 Chy-Chr3:8446379 1.49E-147 dispersed
Chy03g00590 Chy-Chr3:8446379 Chy05g01478 Chy-Chr5:18495143 2.86E-104 dispersed
Chy03g00590 Chy-Chr3:8446379 Chy12g00972 Chy-Chr12:15016824 5.86E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1222 . . . . . . . . Cmo04g02543 Cmo15g00626 . . . . . Cpe06g00929 . Bhi04g01815 Tan11g1185 . . . . . Cla08g00665 Cam08g1096 Cec08g0681 Cco08g0790 Clacu08g0802 . Cre08g0606 . . Cone17ag0797 Cone20ag0396 . . . Cme03g00394 . Blo18g00220 . Bda13g01530 Bpe02g01601 Bpe14g00331 Bma01g00869 . . . . . . Car04g02341 Car15g00570 . . . . . . . . . . . . . . . . Lsi08g00526 . Chy03g00590 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005100 4 4 1 1 2 1 2 0 1 1 0 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 2 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00590 Chy_Chr03 FPKM 8.707692 8.192895 6.533476 7.285695 15.515341 17.507458 15.366473 11.070875 11.540018 10.315258