Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00591 ATGGCCTATGGCGATGAGAAGTATCGTTCTCTTTTGAGTGGTGATGAAGAGAAAAACACCAAATGGAGATATGGGGTTCCTCCTAACTATGATATTGTCAACAAACTCTTTGAAGAAGAGAGGACTACTGTATGGCCTGTTGGGTCACTTGAAGAGAGAGTGCAAAGCCTAGTGAAGAATTTTGAGATGGAAATGTTCCACAAGATATCACCCAGTGACTTCAAAACAATAGATGTAAACAAATATACTTTCTGTCTCAATGGAAGAAAGCCTTTAGCTGTTGGACAAGTAAGTAAACTTGGAGGTTACAATCCCTTCCTTCAGACATCCCTCCCTGATGAGTACAGGTACTATAATGCTGAAAAGGAGACTGCCGAATCATCTCACCGAGCTTTCACTGCGACATTCCTTAGAGGTTTTGCTCTTGAGATTATCCAAGTTTATTCAGGGCCTCCAAATATTGTGTTCAAGTTTAGGCATTGGGGCTACATGGAGGGGCCGTTCAAAAACCATGCCCCCACTGGGGAGAGAATTGAATTCTATGGAGTTGCCATTTTCAAGGTGAATGAGAAAGATAAAATTGAGGGGGTGGAGTTCTTTTTTGACCCAGCGGAGTTGGTTGGAAAACTCCTGAAAGGTCCTGGTTTGGATGGCTCGGTTGAAAAGGCGATTTCGAGCTGCCCTGTCTTGAGAAACACAGGGTAG 705 43.4 MAYGDEKYRSLLSGDEEKNTKWRYGVPPNYDIVNKLFEEERTTVWPVGSLEERVQSLVKNFEMEMFHKISPSDFKTIDVNKYTFCLNGRKPLAVGQVSKLGGYNPFLQTSLPDEYRYYNAEKETAESSHRAFTATFLRGFALEIIQVYSGPPNIVFKFRHWGYMEGPFKNHAPTGERIEFYGVAIFKVNEKDKIEGVEFFFDPAELVGKLLKGPGLDGSVEKAISSCPVLRNTG* 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8454997 8456271 + Chy3G055710.1 Chy03g00591 222752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00591 234 PANTHER PATHOGENESIS-RELATED FAMILY PROTEIN 4 233 - -
Chy03g00591 234 PANTHER PATHOGEN-RELATED PROTEIN-LIKE 4 233 - -
Chy03g00591 234 Gene3D - 107 211 - -
Chy03g00591 234 SUPERFAMILY NTF2-like 123 209 IPR032710 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00591 - - - csv:101202865 473.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01255 Chy-Chr1:15562971 Chy03g00591 Chy-Chr3:8454997 6.38E-104 dispersed
Chy03g00591 Chy-Chr3:8454997 Chy07g00988 Chy-Chr7:14549618 1.59E-75 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1224 . . . . . Bpe04g00021 . . . . . . . . Sed03g0461 . Cpe13g00666 Bhi04g01811 Tan11g1182 Cmetu01g0419 . Hepe02g2772 . Lcy10g1320 Cla08g00666 Cam08g1097 Cec08g0682 Cco08g0791 Clacu08g0803 . Cre08g0607 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00527 . Chy03g00591 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002742 0 2 0 0 1 2 2 2 1 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 3 2 2 2 2 3 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00591 Chy_Chr03 FPKM 23.305763 25.980782 19.646757 17.868706 371.216949 316.358215 387.816162 16.989351 21.731005 18.372534