Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00609 ATGGCAGAGAGTTGGGATGGAAGTTATGAGGATTCTGGAAGTATATCTGACGAGAGTAGTTATTATGCGAGACTGCATATTGAACCTATTTATGATTCGTTTTTGTGCCCTCTAACGAAGCAAGTAATGAGGGATCCTGTTACTATAGAAAGTGGGCAAACGTTTGAACGTGCGGCCATTGAAATGTGGTTCAACGAATGTAAGGAAAGTAGAAGGAGGCCAATTTGTCCAATGACACTTAAGGAATTAAGAAGCACGGAATTGAATCCCAGTATTGCTTTGCGGAATACTATTGAAGAGTGGACTGCTAGAAATGAAGCTGTTCAGCTAGATATGGCTCGTAAGTCACTTAACTTGAGTAGTCCAGAAAATGAAACTTTGGGATCTTTGAAGTATGTTCAACATGTCTGCCAAAAGGGTTTGTCAAGGCACATCGCACGAAATGCTGGGTTAATACCTATGATTGTTAGCTTGTTGAAGAGCACAAGTCGAAAAGTCCAGTTTAGAGCTTTGGAAACCCTTAGAATTGTGGCACAAGAAGACAGTGAGTGTAAGGAAATGTTAGCTGAAGGTGACACTCTTCACACAGTAGTAAAGTTCCTGCGTCATGAGCGTTCAAAGGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCAAGTCTGAAGCCTTGTGTGAAGAGATCGGTTCAGTTAATGGGGCAATTCTTATATTAGTTGGAATGTCGAGCAGTAAAGCTGAGAACATCTCCACAGTTGAAAATGCTGATAGAACATTAGAAAACCTGGAGGTGTGTGAGAATAACATTCGACAAATGGCTGAATATGGTAGACTGAGGCCTCTTCTGACACAGATTCTTGAAGGCCCGCCAGAAACTAAACAATCCATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAACGATGTAAAACTCTTTGTGGCTCAGACTGTGGGGTCATCTCTAATTAATATTATGAGAAGTGGTGATAAGCAGTCAAAAGAAGCTGCATTAAAAGCCTTGAACCAGATATCATCGTTTGAGACTAGTGCAAGAGTTTTGGTTCAGGAAGGGATACTTCCACCTCTCGTTAAGGATCTTTTCACAGTTAGTTCGAATCAACTTCCAATGAAACTAAAAGAAGTATCTGCAACAATTCTTGCCAATGTTGTGAGCTCAGGCTGTGATTTCAATTCAATTCCAGTAGAACCTAATAATCAGTCTACACTTGTGTCTGAAGATACTATTCATAACCTGCTACAACTCATTAGCAATACCGGACCAGCTATCGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACAAGTTCTCCTTCAACTATTTCAAGTATTGTTAATGCCATTAGAAGCTCTGGTGCAGTTATCAGCTTGGTTCAATTTATTGAAGCCCCACAGCTCGACTTGCGTGTTTCTGCTATAAAGCTCCTCCAGAATATCTCCCCACACTTAAGCCAGGAGCTAGCAGATGCTCTACGTGGTTCAGTTGGCCAACTGAGCAGTTTATTTAGAATCATAGCGGAAAATACTGGAATCACCGAAGAACAGGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCAGAAATGGATTTTGGCCTCTCTAGGCAGATGCTTGATGAAGGAGCTTTTGAGTTGGTCTACCTTAGAATTGTTCAACTCCGCCAAGGGGAGACTAGAGGTGGCCGATTTTTAACACCGTTCCTTGAAGGCCTCGTTCGAATTCTTGCAAGGATTACAAGCCTTGTACCGGCTGCTGAGTGTGAGCCTGATGCTAGAGCATTTTGTCGCAGGCACAATCTTGCTGCTTTATTCATTGAACTGCTTCAGTCTAATGGACTCGACAATGTGCAGTTGGTTTCAGCCCTGGCATTGGAAAACTTATCTCTAGAATCCAAAAATTTGACTCAGATACCTACGCTTCCCGAACCTGGATTTTGTGCCTCAATTTTTCCATGTCTCAGCGCACAACCAGTCCTAACAGGGCTGTGTCCTCTCCATCGAGGAACATGTTCTCTGAGGGAAAGTTTTTGTCTTTTGGAAGATAGGGCAGTGAACAAATTAGTAGCCCTTTTAGATCACACAAACGAGAAGGTCGTCGAGGCAGCACTTGCAGCACTATCTACATTGTTGGACGATGGGGTTGATGTTGAAAAGGGGGTTAACATTTTGTACGATGCAGACGGTGTTCAGCCTATATTTAATGTGTTGCTTGAAAACCGTACAGAGAACCTGATGAGAAGAGCCGTTTGGACGGTCGAGAGGCTGTTGCGCTCAGACGACATAGCAATTGAATTCTCAAATAATCCAAAGGTGAGTACAGCTCTTGTTGATGCCTTCCAGCATGGTGATTACAAAACAAGACAAATTGCTGAGCGTGCCTTAAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTTCCTAATCCTAATTTCAACACCTCTCCTCTTAAATCTGATACTGCGTTGGAGATGTCACACACTGTCAAAAAGTCTAGTACCTGGCCGAAGATTTTGAACATTTCAATTCCAAATATAAGGTTTCTGTCAGCAACAAATGCAGCATTCCAGTCCATTGGCGCATCGGGATGTACTGATACCTCTGTCCAGGCAAGGTACACAAGATCTAACTCCCACAGTTTCCTCACAGCCTTATTTCTCTGTCCTATTTGTCCATCCCCTTCACACCACGAGACGGAAAGCATGAACAGCCGACCATTAGAGGATACAAAGTCCCGAAGTCCAGAATGCTTTGGGCTTTGTTTTTTACGAAATCTTTCCTTTACACCATATGAGAAGCAATCCACACCATTTTCTTCAGCACCGAATAAGGATTTATATCCCTTACCTTCCTCACTGGCACTGGATCTTCTTCTACTACCTGGGTCACCAATTTCTTCACCAGTGTCAGCACCAACTTTGCAACCTCCACCTCTACCATATAATGTAAGACATCTCAAAGATATTCCCCTTGAAATGTCCTCTTCCTCAGCAACACCTTTGTTATTCTTCCTCCTCAATTTCTGGCTCATACTTCTCATGAGCCGTTTAGACATGCTCAAATCCTCAAAATCTTGA 3096 42.86 MAESWDGSYEDSGSISDESSYYARLHIEPIYDSFLCPLTKQVMRDPVTIESGQTFERAAIEMWFNECKESRRRPICPMTLKELRSTELNPSIALRNTIEEWTARNEAVQLDMARKSLNLSSPENETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRKVQFRALETLRIVAQEDSECKEMLAEGDTLHTVVKFLRHERSKEKEEAVALLYELSKSEALCEEIGSVNGAILILVGMSSSKAENISTVENADRTLENLEVCENNIRQMAEYGRLRPLLTQILEGPPETKQSMAAHLGELVLNNDVKLFVAQTVGSSLINIMRSGDKQSKEAALKALNQISSFETSARVLVQEGILPPLVKDLFTVSSNQLPMKLKEVSATILANVVSSGCDFNSIPVEPNNQSTLVSEDTIHNLLQLISNTGPAIECKLLQVLVGLTSSPSTISSIVNAIRSSGAVISLVQFIEAPQLDLRVSAIKLLQNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPEMDFGLSRQMLDEGAFELVYLRIVQLRQGETRGGRFLTPFLEGLVRILARITSLVPAAECEPDARAFCRRHNLAALFIELLQSNGLDNVQLVSALALENLSLESKNLTQIPTLPEPGFCASIFPCLSAQPVLTGLCPLHRGTCSLRESFCLLEDRAVNKLVALLDHTNEKVVEAALAALSTLLDDGVDVEKGVNILYDADGVQPIFNVLLENRTENLMRRAVWTVERLLRSDDIAIEFSNNPKVSTALVDAFQHGDYKTRQIAERALRHVDKLPNFSNIFPNPNFNTSPLKSDTALEMSHTVKKSSTWPKILNISIPNIRFLSATNAAFQSIGASGCTDTSVQARYTRSNSHSFLTALFLCPICPSPSHHETESMNSRPLEDTKSRSPECFGLCFLRNLSFTPYEKQSTPFSSAPNKDLYPLPSSLALDLLLLPGSPISSPVSAPTLQPPPLPYNVRHLKDIPLEMSSSSATPLLFFLLNFWLILLMSRLDMLKSSKS* 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8656921 8672423 - Chy3G055890.1 Chy03g00609 222770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00609 1031 SMART arm_5 181 221 IPR000225 GO:0005515
Chy03g00609 1031 SMART arm_5 448 488 IPR000225 GO:0005515
Chy03g00609 1031 SMART arm_5 139 179 IPR000225 GO:0005515
Chy03g00609 1031 SMART arm_5 721 763 IPR000225 GO:0005515
Chy03g00609 1031 SMART arm_5 676 717 IPR000225 GO:0005515
Chy03g00609 1031 SMART arm_5 594 635 IPR000225 GO:0005515
Chy03g00609 1031 SMART arm_5 266 306 IPR000225 GO:0005515
Chy03g00609 1031 SMART arm_5 347 392 IPR000225 GO:0005515
Chy03g00609 1031 SMART arm_5 307 346 IPR000225 GO:0005515
Chy03g00609 1031 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Chy03g00609 1031 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 815 - -
Chy03g00609 1031 SUPERFAMILY ARM repeat 112 445 IPR016024 -
Chy03g00609 1031 CDD RING-Ubox_PUB 34 79 IPR045210 -
Chy03g00609 1031 SUPERFAMILY RING/U-box 18 111 - -
Chy03g00609 1031 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 106 IPR013083 -
Chy03g00609 1031 Gene3D - 107 536 IPR011989 -
Chy03g00609 1031 Gene3D - 574 814 IPR011989 -
Chy03g00609 1031 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 815 - -
Chy03g00609 1031 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Chy03g00609 1031 SUPERFAMILY ARM repeat 418 805 IPR016024 -
Chy03g00609 1031 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00609 - - - csv:101217370 1541.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00609 Chy-Chr3:8656921 Chy10g01080 Chy-Chr10:15896281 2.28E-121 dispersed
Chy03g00609 Chy-Chr3:8656921 Chy12g00185 Chy-Chr12:2245357 1.50E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g75 Blo01g01639 . . . Bpe02g00304 . . Bma01g02413 Cmo05g00990 . . . . . . . . Bhi04g01222 . . . . . . Cla08g00936 Cam08g1383 Cec08g0964 Cco08g1083 Clacu08g1090 . Cre08g0873 . . Cone17ag1462 . . . . Cme03g01335 . Blo18g00742 Bda11g00977 Bda01g01564 Bpe02g01758 . Bma01g00699 . . . . . Cma05g00970 Car05g00854 . Cpe11g00782 . . . . . . . . . . . . . . . Lsi08g00778 . Chy03g00609 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006312 2 1 2 2 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 0 2 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00609 Chy_Chr03 FPKM 5.148701 4.712725 8.592482 7.717999 35.851307 40.081322 33.647682 1.221517 0.842519 0.917631