Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00609 ATGGCAGAGAGTTGGGATGGAAGTTATGAGGATTCTGGAAGTATATCTGACGAGAGTAGTTATTATGCGAGACTGCATATTGAACCTATTTATGATTCGTTTTTGTGCCCTCTAACGAAGCAAGTAATGAGGGATCCTGTTACTATAGAAAGTGGGCAAACGTTTGAACGTGCGGCCATTGAAATGTGGTTCAACGAATGTAAGGAAAGTAGAAGGAGGCCAATTTGTCCAATGACACTTAAGGAATTAAGAAGCACGGAATTGAATCCCAGTATTGCTTTGCGGAATACTATTGAAGAGTGGACTGCTAGAAATGAAGCTGTTCAGCTAGATATGGCTCGTAAGTCACTTAACTTGAGTAGTCCAGAAAATGAAACTTTGGGATCTTTGAAGTATGTTCAACATGTCTGCCAAAAGGGTTTGTCAAGGCACATCGCACGAAATGCTGGGTTAATACCTATGATTGTTAGCTTGTTGAAGAGCACAAGTCGAAAAGTCCAGTTTAGAGCTTTGGAAACCCTTAGAATTGTGGCACAAGAAGACAGTGAGTGTAAGGAAATGTTAGCTGAAGGTGACACTCTTCACACAGTAGTAAAGTTCCTGCGTCATGAGCGTTCAAAGGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCAAGTCTGAAGCCTTGTGTGAAGAGATCGGTTCAGTTAATGGGGCAATTCTTATATTAGTTGGAATGTCGAGCAGTAAAGCTGAGAACATCTCCACAGTTGAAAATGCTGATAGAACATTAGAAAACCTGGAGGTGTGTGAGAATAACATTCGACAAATGGCTGAATATGGTAGACTGAGGCCTCTTCTGACACAGATTCTTGAAGGCCCGCCAGAAACTAAACAATCCATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAACGATGTAAAACTCTTTGTGGCTCAGACTGTGGGGTCATCTCTAATTAATATTATGAGAAGTGGTGATAAGCAGTCAAAAGAAGCTGCATTAAAAGCCTTGAACCAGATATCATCGTTTGAGACTAGTGCAAGAGTTTTGGTTCAGGAAGGGATACTTCCACCTCTCGTTAAGGATCTTTTCACAGTTAGTTCGAATCAACTTCCAATGAAACTAAAAGAAGTATCTGCAACAATTCTTGCCAATGTTGTGAGCTCAGGCTGTGATTTCAATTCAATTCCAGTAGAACCTAATAATCAGTCTACACTTGTGTCTGAAGATACTATTCATAACCTGCTACAACTCATTAGCAATACCGGACCAGCTATCGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACAAGTTCTCCTTCAACTATTTCAAGTATTGTTAATGCCATTAGAAGCTCTGGTGCAGTTATCAGCTTGGTTCAATTTATTGAAGCCCCACAGCTCGACTTGCGTGTTTCTGCTATAAAGCTCCTCCAGAATATCTCCCCACACTTAAGCCAGGAGCTAGCAGATGCTCTACGTGGTTCAGTTGGCCAACTGAGCAGTTTATTTAGAATCATAGCGGAAAATACTGGAATCACCGAAGAACAGGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCAGAAATGGATTTTGGCCTCTCTAGGCAGATGCTTGATGAAGGAGCTTTTGAGTTGGTCTACCTTAGAATTGTTCAACTCCGCCAAGGGGAGACTAGAGGTGGCCGATTTTTAACACCGTTCCTTGAAGGCCTCGTTCGAATTCTTGCAAGGATTACAAGCCTTGTACCGGCTGCTGAGTGTGAGCCTGATGCTAGAGCATTTTGTCGCAGGCACAATCTTGCTGCTTTATTCATTGAACTGCTTCAGTCTAATGGACTCGACAATGTGCAGTTGGTTTCAGCCCTGGCATTGGAAAACTTATCTCTAGAATCCAAAAATTTGACTCAGATACCTACGCTTCCCGAACCTGGATTTTGTGCCTCAATTTTTCCATGTCTCAGCGCACAACCAGTCCTAACAGGGCTGTGTCCTCTCCATCGAGGAACATGTTCTCTGAGGGAAAGTTTTTGTCTTTTGGAAGATAGGGCAGTGAACAAATTAGTAGCCCTTTTAGATCACACAAACGAGAAGGTCGTCGAGGCAGCACTTGCAGCACTATCTACATTGTTGGACGATGGGGTTGATGTTGAAAAGGGGGTTAACATTTTGTACGATGCAGACGGTGTTCAGCCTATATTTAATGTGTTGCTTGAAAACCGTACAGAGAACCTGATGAGAAGAGCCGTTTGGACGGTCGAGAGGCTGTTGCGCTCAGACGACATAGCAATTGAATTCTCAAATAATCCAAAGGTGAGTACAGCTCTTGTTGATGCCTTCCAGCATGGTGATTACAAAACAAGACAAATTGCTGAGCGTGCCTTAAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTTCCTAATCCTAATTTCAACACCTCTCCTCTTAAATCTGATACTGCGTTGGAGATGTCACACACTGTCAAAAAGTCTAGTACCTGGCCGAAGATTTTGAACATTTCAATTCCAAATATAAGGTTTCTGTCAGCAACAAATGCAGCATTCCAGTCCATTGGCGCATCGGGATGTACTGATACCTCTGTCCAGGCAAGGTACACAAGATCTAACTCCCACAGTTTCCTCACAGCCTTATTTCTCTGTCCTATTTGTCCATCCCCTTCACACCACGAGACGGAAAGCATGAACAGCCGACCATTAGAGGATACAAAGTCCCGAAGTCCAGAATGCTTTGGGCTTTGTTTTTTACGAAATCTTTCCTTTACACCATATGAGAAGCAATCCACACCATTTTCTTCAGCACCGAATAAGGATTTATATCCCTTACCTTCCTCACTGGCACTGGATCTTCTTCTACTACCTGGGTCACCAATTTCTTCACCAGTGTCAGCACCAACTTTGCAACCTCCACCTCTACCATATAATGTAAGACATCTCAAAGATATTCCCCTTGAAATGTCCTCTTCCTCAGCAACACCTTTGTTATTCTTCCTCCTCAATTTCTGGCTCATACTTCTCATGAGCCGTTTAGACATGCTCAAATCCTCAAAATCTTGA 3096 42.86 MAESWDGSYEDSGSISDESSYYARLHIEPIYDSFLCPLTKQVMRDPVTIESGQTFERAAIEMWFNECKESRRRPICPMTLKELRSTELNPSIALRNTIEEWTARNEAVQLDMARKSLNLSSPENETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRKVQFRALETLRIVAQEDSECKEMLAEGDTLHTVVKFLRHERSKEKEEAVALLYELSKSEALCEEIGSVNGAILILVGMSSSKAENISTVENADRTLENLEVCENNIRQMAEYGRLRPLLTQILEGPPETKQSMAAHLGELVLNNDVKLFVAQTVGSSLINIMRSGDKQSKEAALKALNQISSFETSARVLVQEGILPPLVKDLFTVSSNQLPMKLKEVSATILANVVSSGCDFNSIPVEPNNQSTLVSEDTIHNLLQLISNTGPAIECKLLQVLVGLTSSPSTISSIVNAIRSSGAVISLVQFIEAPQLDLRVSAIKLLQNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPEMDFGLSRQMLDEGAFELVYLRIVQLRQGETRGGRFLTPFLEGLVRILARITSLVPAAECEPDARAFCRRHNLAALFIELLQSNGLDNVQLVSALALENLSLESKNLTQIPTLPEPGFCASIFPCLSAQPVLTGLCPLHRGTCSLRESFCLLEDRAVNKLVALLDHTNEKVVEAALAALSTLLDDGVDVEKGVNILYDADGVQPIFNVLLENRTENLMRRAVWTVERLLRSDDIAIEFSNNPKVSTALVDAFQHGDYKTRQIAERALRHVDKLPNFSNIFPNPNFNTSPLKSDTALEMSHTVKKSSTWPKILNISIPNIRFLSATNAAFQSIGASGCTDTSVQARYTRSNSHSFLTALFLCPICPSPSHHETESMNSRPLEDTKSRSPECFGLCFLRNLSFTPYEKQSTPFSSAPNKDLYPLPSSLALDLLLLPGSPISSPVSAPTLQPPPLPYNVRHLKDIPLEMSSSSATPLLFFLLNFWLILLMSRLDMLKSSKS* 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8656921 8672423 - Chy3G055890.1 Chy03g00609 222770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00609 1031 SMART arm_5 181 221 IPR000225 GO:0005515
Chy03g00609 1031 SMART arm_5 448 488 IPR000225 GO:0005515
Chy03g00609 1031 SMART arm_5 139 179 IPR000225 GO:0005515
Chy03g00609 1031 SMART arm_5 721 763 IPR000225 GO:0005515
Chy03g00609 1031 SMART arm_5 676 717 IPR000225 GO:0005515
Chy03g00609 1031 SMART arm_5 594 635 IPR000225 GO:0005515
Chy03g00609 1031 SMART arm_5 266 306 IPR000225 GO:0005515
Chy03g00609 1031 SMART arm_5 347 392 IPR000225 GO:0005515
Chy03g00609 1031 SMART arm_5 307 346 IPR000225 GO:0005515
Chy03g00609 1031 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Chy03g00609 1031 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 815 - -
Chy03g00609 1031 SUPERFAMILY ARM repeat 112 445 IPR016024 -
Chy03g00609 1031 CDD RING-Ubox_PUB 34 79 IPR045210 -
Chy03g00609 1031 SUPERFAMILY RING/U-box 18 111 - -
Chy03g00609 1031 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 106 IPR013083 -
Chy03g00609 1031 Gene3D - 107 536 IPR011989 -
Chy03g00609 1031 Gene3D - 574 814 IPR011989 -
Chy03g00609 1031 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 815 - -
Chy03g00609 1031 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Chy03g00609 1031 SUPERFAMILY ARM repeat 418 805 IPR016024 -
Chy03g00609 1031 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00609 Chy-Chr3:8656921 Chy10g01080 Chy-Chr10:15896281 2.28E-121 dispersed
Chy03g00609 Chy-Chr3:8656921 Chy12g00185 Chy-Chr12:2245357 1.50E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00609 - - csv:101217370 1541.55