Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00633 ATGAGAAGAGAGGCAGAATCTTTAATGAGAAATGAGATAGGATTGGAGGAGAGGGATGATGATGATATGGTTTCGAGAAGATTGGATCTTGTTTATGGAGGTGGAAGTATTGGGTTAATGGGGCTTGTCTCTCGTGAGGTTCACAATGGAGGTGGACATGTCATAGGAATTATCCCAAAAACCTTGATGCGTAAAGAGATTACTGGAGAAACAGTTGGGGAGGTCCGACCAGTAGCCGACATGCATCAAAGGAAAGCGGAGATGGCCCGCCATTCTGACTGTTTCATTGCCCTCCCAGGTGGATATGGAACGTTGGAAGAGCTACTCGAAGTCATAACCTGGGCCCAACTCGGCATCCATGACAAGCCGGTGGGTTTGCTTAATGTTCATGGCTATTACAACTCGCTTCTCTCCTTCATTGACAAGGCGGTAGATGACGGCTTTATCATGCCGTCTCAACGTAGTATTATCGTATCTGCCCCAAACGCTAAGGAGCTTGTTCAGAAACTCGAGGATAGAAATTGGCAGGAATATGTGCCAGTTCACGATGGTGTGGTGGCAAAAGCCAAGTGGGAAGCGGCACAAATGGAGCTAAACGCCACTTTACAGACAGAATTCTACCGGTGA 627 47.21 MRREAESLMRNEIGLEERDDDDMVSRRLDLVYGGGSIGLMGLVSREVHNGGGHVIGIIPKTLMRKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVHGYYNSLLSFIDKAVDDGFIMPSQRSIIVSAPNAKELVQKLEDRNWQEYVPVHDGVVAKAKWEAAQMELNATLQTEFYR* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8844472 8847584 - Chy3G056130.1 Chy03g00633 222794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00633 208 Pfam Possible lysine decarboxylase 40 170 IPR031100 -
Chy03g00633 208 TIGRFAM TIGR00730: TIGR00730 family protein 23 171 IPR005269 GO:0009691|GO:0016787
Chy03g00633 208 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 21 206 - -
Chy03g00633 208 SUPERFAMILY MCP/YpsA-like 23 172 - -
Chy03g00633 208 PANTHER LOG FAMILY PROTEIN YJL055W 21 206 - -
Chy03g00633 208 Gene3D - 21 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00633 K22522 LOG; cytokinin riboside 5'-monophosphate phosphoribohydrolase [EC:3.2.2.-] - csv:101207180 350.132
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00633 Chy-Chr3:8844472 Chy11g01113 Chy-Chr11:16458622 1.69E-95 dispersed
Chy03g00633 Chy-Chr3:8844472 Chy04g02062 Chy-Chr4:26152586 1.19E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g124 . . . . . . . . Cmo05g01011 . . . . . . . . Bhi04g01557 . . . . . . Cla08g00964 . . . . . . . . . . . . . Cme03g01358 Blo17g00713 . Bda08g01175 . . . . . . . . . Cma05g00993 Car05g00875 . . . . . . . . . . . . . . . . . Lsi08g00804 . Chy03g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000072 8 13 9 10 10 8 15 8 8 8 8 8 15 8 9 12 8 3 15 8 9 9 9 9 7 7 8 15 16 7 287
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00633 Chy_Chr03 FPKM 25.900372 24.536991 730.480957 720.131653 181.27655 188.679276 170.758957 4599.437012 4710.32959 4296.329102