Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00639 ATGGAAGAAAATTCCGCAATCCGCCCTATTCGATGTAGAGCTGCTGTTTGCCGCAAGCCTGGTGAGCCACTAGTGATTGAGGACATCATTGTGGCACCGCCAATGCCTCGTGAAGTTCGAATTCGGATAATATGCACTTCTTTGTGTCAGAGTGATATCGCCTTTTGGAAGTTGAAGGATCTTCCGGGGATTGTTCCTAGAATTCTGGGCCACGAAGCTTACGGTGTAGTTGAGAGTGTAGGGAAGGATGTCTATGAAGTTAAGGAAGGAGATTCTGTTATCCCAATTTTCATGGCTGACTGTGGGGAGTGTGCAGATTGCTTATCAGAGAAAAGCAATCTCTGTTCTAAATTCCCTTTCAAGATAGCTCTGGGGATGCCACGCTGTGGGACAAGCAGATTCACGGATCTCAATGGAGAGGTTCTTCATCATCTTCTGTATGTGTCAAGTTTCAGTGAATACACAGTGGTAGATATTGCCAATATACTAAAAGTAGATCCTAAAATACCTCCAAACAGGGCATGCCTCCTTAGTTGTGGAGTAGCAACAGGGGTTGGTGCGGCATGGAGAACAGCAAATGTGGAGAAGGGATCTACTGTTGCTATTTTTGGACTGGGGTCCATAGGTTTAGCTGTTGCTGAAGGAGCAAGAATATGTGGAGCAAGCAGGATCATTGGGATAGATATCAACCCAGATAAATTTGAAGCTGCAAAAAAGTTTGGAATCACTGAGTTCGTAAATTCTAGAAGCCTTGGGGATAAATCTTTGAGCGAGGTAATCAATGAAATGACCGATGGGGGTGCAGATTACTGCTTTGAATGTGTTGGAGCTGCTTCCTTAGTTCAGGAAGCATTTTCATGCTGCAGACAGGGTTGGGGAAAAACAATTGTGGTAGGAATAGACAAACCTGGTGCAATTTTGAGTTTAAGCTCTTTTGATATCCTTTTTCGTGGAAAGAGTCTCATGGGATCGTTATATGGAGGGCTGAAGCCTAAATCAGATGTTCCCACTCTTCTTAAATGGTACACAGATAAGAAACTTGAGCTGGATAAATTTGTCACACATGAAGTAGGTTTTGAAGATATCAATGAAGCTTTTAAAATGTTAATTGAAGATGACTATGACCCATTTGAGTGA 1137 42.83 MEENSAIRPIRCRAAVCRKPGEPLVIEDIIVAPPMPREVRIRIICTSLCQSDIAFWKLKDLPGIVPRILGHEAYGVVESVGKDVYEVKEGDSVIPIFMADCGECADCLSEKSNLCSKFPFKIALGMPRCGTSRFTDLNGEVLHHLLYVSSFSEYTVVDIANILKVDPKIPPNRACLLSCGVATGVGAAWRTANVEKGSTVAIFGLGSIGLAVAEGARICGASRIIGIDINPDKFEAAKKFGITEFVNSRSLGDKSLSEVINEMTDGGADYCFECVGAASLVQEAFSCCRQGWGKTIVVGIDKPGAILSLSSFDILFRGKSLMGSLYGGLKPKSDVPTLLKWYTDKKLELDKFVTHEVGFEDINEAFKMLIEDDYDPFE* 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8898338 8910247 - Chy3G056190.1 Chy03g00639 222800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00639 378 Pfam Zinc-binding dehydrogenase 208 343 IPR013149 -
Chy03g00639 378 PANTHER ALCOHOL DEHYDROGENASE 7 372 - -
Chy03g00639 378 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Chy03g00639 378 Gene3D - 15 371 - -
Chy03g00639 378 SUPERFAMILY GroES-like 332 371 IPR011032 -
Chy03g00639 378 SUPERFAMILY GroES-like 8 192 IPR011032 -
Chy03g00639 378 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 7 372 - -
Chy03g00639 378 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 345 IPR036291 -
Chy03g00639 378 Pfam Alcohol dehydrogenase GroES-like domain 37 165 IPR013154 -
Chy03g00639 378 Gene3D - 184 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00639 K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] - csv:101211996 725.317
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00637 Chy-Chr3:8880512 Chy03g00639 Chy-Chr3:8898338 0 dispersed
Chy03g00639 Chy-Chr3:8898338 Chy03g01352 Chy-Chr3:16434433 8.07E-150 dispersed
Chy03g00638 Chy-Chr3:8893358 Chy03g00639 Chy-Chr3:8898338 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi09g01519 . . . . . . . . . . . . . Lsi08g01297 . Chy03g00639 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00639 Chy_Chr03 FPKM 3.884623 5.204314 4.33231 6.07521 6.815825 7.504 5.809459 7.480647 4.637346 5.542039