Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00644 ATGGCTGCCGCAGCTGTAACCACCGCCCACCAAAGCCGTCACCGATCAGTGTCCAAAGTGGCCATAATTGGGGCTGGCATTAGCGGAATCGCCGCCGCTAAGCATCTCTCCAGTCACCACCCTGTGGTGTTTGAGGCCACAGACTCCATAGGCGGCGTGTGGAAGCACTGCGCTTATCGGACCACGAGGCTGCAGACACCTCGCCGGGATTTTGAATTCTCCGACTACCCGTGGCCATCGCAGACGACGGAGAGCGATGAGTTTCCAACGTATTTGGAGGTTTTGGATTATTTGCATGGCTATGCAACGCATTTTGATGTGTTGAAGTTCGTCAAGTTCAATAGCAAAGTGATCCAACTCCGATACATTGGCGGCCCCGAAGCTGAAGATTCCACGGCGGCGGCTGGAGTGTACGGAAGTTTACTTAATGGCCGTCCTGCTTGGGAGGTCGCTGTTCAAGACACTCACCTCAACACCATTCAGTGGTATGAATTGGAGTTGGTAGTGATATGTGTGGGAAGATATGGAGACATACCAAACATACCAACATTCCCTCACAATAAAGGTCAAGAGGTTTTCAAAGGCAAGGTTTTACACTCATTGGACTACGCGAAGCTCGACCACGACGATGCACGTGCCCTACTTCAAAACAAACGCGTTGTTATTGTTGGGTATCGAAAATCTGCTATTGATCTAGCTGTTGAATGTGCTGAAGCAAATCAAGGACCAGAAGGGAAGGCTTGCACAATGTTGATTAGGTCACTTCATTGGACAGTCCCATCCTATAGAATATGGGGATTACCTTTTTTCTTGTTTTATTCAACAAGATTCTCTCAGTTCCTCCAAGAAACCCCTAATCCAGGCCTCCTTAAGTCCATTTTCTGCTCCCTCTTTTCTCCAATGATCAGAAAGGTATTTTCTAAGTTCATAGAATCATATTTAACGTGGAAGATGCCATTAGAGAAGTATGGCCTAAAACCCGAGCATTCATTTGAAGAAGATTATGCTTCTTGTCAAATGGCTATTATGCCAAACACTTTCTTTGAGGAAGCAGATAAAGGGAAGATTGTGTTTAAAAAGACAACAAAATGGTGGTTTTGGAGTGGTGGAGTTGTATTTGACGAAGAACATAACAACAACACTACTAAATTAGAAGCGGATGTTGTCATTTTTAACACTGGTTTTCAAGGCAAACTGAAGCTTCAATCTTTGTTGCCTCATCCTTTTAATACCCTTTTGGTTGATTCTTCAGATATCATCCCTTTGTATAGGGGAGTGATTCATCCACTGATACCAAACATGGCATTTGTGGGCTATCTTGAGAGTGTGTCGAACCTTCGAACAGGTGAGTTACGGTGCAAATGGCTCGCAAAACTGGCGGAGGATGGCTTCAAACTTCCAAGCATTCACCAAATGCTTCAACAAGTTTCTGATGAAATTCAAGTCATGAAGAACACTACACGTTTCTACAAGCGTCAATGTGTTTCCACCTTCAGCATTAGCTATACTGATGAGATTTCTCAAGATATATATGGCTAA 1539 44.51 MAAAAVTTAHQSRHRSVSKVAIIGAGISGIAAAKHLSSHHPVVFEATDSIGGVWKHCAYRTTRLQTPRRDFEFSDYPWPSQTTESDEFPTYLEVLDYLHGYATHFDVLKFVKFNSKVIQLRYIGGPEAEDSTAAAGVYGSLLNGRPAWEVAVQDTHLNTIQWYELELVVICVGRYGDIPNIPTFPHNKGQEVFKGKVLHSLDYAKLDHDDARALLQNKRVVIVGYRKSAIDLAVECAEANQGPEGKACTMLIRSLHWTVPSYRIWGLPFFLFYSTRFSQFLQETPNPGLLKSIFCSLFSPMIRKVFSKFIESYLTWKMPLEKYGLKPEHSFEEDYASCQMAIMPNTFFEEADKGKIVFKKTTKWWFWSGGVVFDEEHNNNTTKLEADVVIFNTGFQGKLKLQSLLPHPFNTLLVDSSDIIPLYRGVIHPLIPNMAFVGYLESVSNLRTGELRCKWLAKLAEDGFKLPSIHQMLQQVSDEIQVMKNTTRFYKRQCVSTFSISYTDEISQDIYG* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8949442 8953097 - Chy3G056240.1 Chy03g00644 222805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00644 512 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 10 510 - -
Chy03g00644 512 PANTHER DIMETHYLANILINE MONOOXYGENASE 10 510 - -
Chy03g00644 512 SUPERFAMILY FAD/NAD(P)-binding domain 332 507 IPR036188 -
Chy03g00644 512 Gene3D - 13 283 IPR036188 -
Chy03g00644 512 SUPERFAMILY FAD/NAD(P)-binding domain 19 292 IPR036188 -
Chy03g00644 512 Gene3D - 322 511 IPR036188 -
Chy03g00644 512 PIRSF FMO 16 511 IPR000960 GO:0050660|GO:0050661
Chy03g00644 512 Pfam Flavin-binding monooxygenase-like 19 510 IPR020946 GO:0004499|GO:0050660|GO:0050661
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00644 K00485 FMO; dimethylaniline monooxygenase (N-oxide forming) / hypotaurine monooxygenase [EC:1.14.13.8 1.8.1.-] - csv:101205746 1026.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01302 Chy-Chr2:9595493 Chy03g00644 Chy-Chr3:8949442 0 dispersed
Chy03g00644 Chy-Chr3:8949442 Chy11g01162 Chy-Chr11:17714981 1.85E-130 dispersed
Chy12g01520 Chy-Chr12:18979022 Chy03g00644 Chy-Chr3:8949442 8.68E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g187 . . . . . Bpe02g00314 . . . . . . . . . . . Bhi04g01538 Tan02g1562 Cmetu03g0531 . Hepe08g1457 . Lcy13g2236 . . . . . . . Cone4ag1711 Cone7ag1629 . . . . . . Blo17g00265 . . . Bpe14g00290 . . Bma02g00330 . . . . . . . . . . . . . . . . Cla08g00973 Cam08g1422 Cec08g1001 Cco08g1124 Clacu08g1126 . Cre08g0910 Lsi08g00821 . Chy03g00644 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002096 2 2 3 2 3 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 3 2 2 2 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00644 Chy_Chr03 FPKM 18.448591 18.316902 22.353271 21.294437 25.722399 26.76668 28.67874 22.792715 23.221437 29.123575