Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00656 ATGGCCATCCAATTTAAGTTCAGAAGCTCCGTGAACTTCGACTCGGTGGATATCCAAGGCAGACCTTCCATATCAATTGGCGATCTTAAATCCAAAATCATTCGCATGAAGAACCTCGACACCTGCCAAAACTTTGATCTCGTTTTCTCCGATGCCCGAACCGGTCAAGATTTGACCGACGAGAAACTCGAAATTCCGAGTGGTTCATGCGTGATTATCAAGAGAGTTCCCGCAGGATCAGTTCCTTCCAATGTTGTGCGTCACGACTTGTTTGGGAATTTTCAAGTCAAAGACACTCACATGGTTAAATCATCTCGTCCAGTGGATGTGGAGACAGAATATTTTGATGATTTTGGCGTCGACTTATACCCTATTCGCAAATCAAACTCATCAATTTCTCTCAATAATAAAAATAACGATGCTGTTAGACATTATAAGGAAACCAAAAGAGGATATATTCAGCCTGAAGGAAGTGGAATTAGTGAGGCCATTCAAGGAGTTGGAGAAACTGACCTGCAGACGAACATAAAAGTTAATGTTGGCGAGTGCATTGGTTTGGAGAAACCAATTGCACCAGTGATTCATAAATGTGAAATTCCTTCAGAACTGAAGTGTACTCTTTGCAACTCACTCTTTGTGGATGCTGTAATTACTGGTTGCTGCAAGCATAGTTTTTGTGAGAAATGCATTCATCATGTTTTGCTGCGAAAGACAATGTGCCCTAAGTGTGCCTCAAGCAAATATAAACTAGAAGATTTGTCGCCAAATTTATCTCTTAGGCAAAATGTTGCCCATTTCCTTGAGTCTCAGTTCCTGATGGGTGATTCAGACAATAATCATGAAGCACCAGACGAAGAATCAAGAATTGAAGGACAGGACATGCATTGTTTGCCTTATGCTACTAGTAGAGGTTGTAATCAAGAAGCGGTGGATGACGACCATGTCTCATCAATGAGAAGAAATATGATGGTTAAAGTTGATAGAACACAATTTCAATCATGCCATCAAGATAAGTTCGGTGGAAAACCTCTGGACCTCCCTCCTTTTGATGATTGTCAAGGGGAAAGCCAGCCTGTTTTTGGGGATTTTAAGCATGGGTTGCTGGTCAATGACTTTGATATGCAAGGCAGAATCCAAAATCTCACAGATTTTAGAAGACAGAAGAAGCGTGGCCGTGCTTGTTACATGTGTGGTTCTCTGGACCATCTCATTAGAGACTGTCCAGTTGCTTCAAAGCCACATCCCATGCATCTAATGGGAGCTTTGCCATATTATGCATCACCTTGGCCTCATGTCAGTTCATTTCCTAACTTATATGGTTGCCCCATGGCTTTCAATGCACCAATGGTGCCTGATGCAAATTCTTACTGGGCATCTGTTTATGGTGGATATCCTGCCCCAAGTGGATTTGTGGGCATGAGAGACATGAATGCTCCACCACTTCGGAAGACTGAAGAGTTCTGTGCTGGTAATTCAGAATTTGTACACCGTAGCAACACTGATAAAAACAGGACAATCCCAGAAAATAGTACCTGGAGGGTAATGCCTTTCTCCAATGAGGATGGAAGTGAGGGAAAAGATCATGTTGGTAATAAGAGAGGTCAACATGAGCAGGATGGAAGATCAAGAGACTACAGAATGTATGTAGAAAAGGAACACCTGCGCAAAGAAAATACCCAAAACGAAATAAATTGGCTCTATGACGAGAAAATGAAGAGTTCGCATTCTCCTAAAGCTGCAATGATAAATAGACTAAACGAGAGATTGAAGTTGGAGAAAGAAGGCTTGACTTGCAGCACCAAATTACTGACTAATGAGAGAACTGGGCATTACCAGAGAGGCTTCAGGGAGGTTGGTGCGAGGACAGATGAATGTTGCAGTCATGCCGACTCGAATGAGCATAAAAGATACAAACAAAAAGAAGATAAAATCGATACATTTGATATCGACTTAAAGTGTCATACTAAGAAACATCATAGTTGCTCAAAGCCAGATTTGGCACGTAGCTATTCCAGCAATCAGAAACTCCTACAAAAAGATTCTGGTTTCATCTCTAGATATTCTAAGCACAACGAGCTTACTCAATATCATCAGCAAATAGTTGGTGGGACAGATGATAGTCATGAAGAATGGAACCATAAGTATAAACGAAAAAGGTTTGTGAAAAACTATAGAACTGAATTCTAA 2187 41.11 MAIQFKFRSSVNFDSVDIQGRPSISIGDLKSKIIRMKNLDTCQNFDLVFSDARTGQDLTDEKLEIPSGSCVIIKRVPAGSVPSNVVRHDLFGNFQVKDTHMVKSSRPVDVETEYFDDFGVDLYPIRKSNSSISLNNKNNDAVRHYKETKRGYIQPEGSGISEAIQGVGETDLQTNIKVNVGECIGLEKPIAPVIHKCEIPSELKCTLCNSLFVDAVITGCCKHSFCEKCIHHVLLRKTMCPKCASSKYKLEDLSPNLSLRQNVAHFLESQFLMGDSDNNHEAPDEESRIEGQDMHCLPYATSRGCNQEAVDDDHVSSMRRNMMVKVDRTQFQSCHQDKFGGKPLDLPPFDDCQGESQPVFGDFKHGLLVNDFDMQGRIQNLTDFRRQKKRGRACYMCGSLDHLIRDCPVASKPHPMHLMGALPYYASPWPHVSSFPNLYGCPMAFNAPMVPDANSYWASVYGGYPAPSGFVGMRDMNAPPLRKTEEFCAGNSEFVHRSNTDKNRTIPENSTWRVMPFSNEDGSEGKDHVGNKRGQHEQDGRSRDYRMYVEKEHLRKENTQNEINWLYDEKMKSSHSPKAAMINRLNERLKLEKEGLTCSTKLLTNERTGHYQRGFREVGARTDECCSHADSNEHKRYKQKEDKIDTFDIDLKCHTKKHHSCSKPDLARSYSSNQKLLQKDSGFISRYSKHNELTQYHQQIVGGTDDSHEEWNHKYKRKRFVKNYRTEF* 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9135002 9142025 + Chy3G056360.1 Chy03g00656 222817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00656 728 Pfam U-box domain 199 269 IPR003613 GO:0004842|GO:0016567
Chy03g00656 728 ProSiteProfiles DWNN domain profile. 3 77 IPR014891 GO:0008270
Chy03g00656 728 SUPERFAMILY Retrovirus zinc finger-like domains 384 412 IPR036875 GO:0003676|GO:0008270
Chy03g00656 728 ProSitePatterns Zinc finger RING-type signature. 221 230 IPR017907 -
Chy03g00656 728 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBBP6-LIKE ISOFORM X1 1 720 - -
Chy03g00656 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 272 IPR013083 -
Chy03g00656 728 PANTHER RETINOBLASTOMA-BINDING PROTEIN 6 1 720 IPR033489 GO:0006397|GO:0016567|GO:0061630
Chy03g00656 728 Gene3D - 386 514 - -
Chy03g00656 728 MobiDBLite consensus disorder prediction 520 543 - -
Chy03g00656 728 SMART DWNN_2 3 77 IPR014891 GO:0008270
Chy03g00656 728 Gene3D - 1 81 - -
Chy03g00656 728 Pfam Zinc knuckle 392 408 IPR001878 GO:0003676|GO:0008270
Chy03g00656 728 SUPERFAMILY RING/U-box 196 268 - -
Chy03g00656 728 MobiDBLite consensus disorder prediction 518 543 - -
Chy03g00656 728 ProSiteProfiles Zinc finger CCHC-type profile. 394 408 IPR001878 GO:0003676|GO:0008270
Chy03g00656 728 CDD vRING-HC-C4C4_RBBP6 200 243 - -
Chy03g00656 728 Pfam DWNN domain 3 77 IPR014891 GO:0008270
Chy03g00656 728 ProSiteProfiles Zinc finger RING-type profile. 205 243 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00656 - - - csv:101204547 1437.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00656 Chy-Chr3:9135002 Chy06g02064 Chy-Chr6:24807419 1.98E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g150 . . . . . . . . . Cmo12g00602 . . . Car12g00644 . Cpe07g00577 . Bhi04g01513 Tan02g1585 . . Hepe08g1435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00661 . . . . . . . . . . . Cla08g00988 . . . . . . Lsi08g00832 . Chy03g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010055 0 4 0 0 0 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 4 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00656 Chy_Chr03 FPKM 9.525671 8.662621 2.662225 2.926818 1.258436 1.369397 1.31476 4.713666 4.231918 4.321226